Table 2.

Alignment and processing statistics for sequencing read data

	I1_M_plasma		G1_M_plasma
	Number of reads	Proportion of total	Number of reads	Proportion of total
Total	2663662496	1	1920061404	1
Aligned	2462191486	0.92	1758285925	0.92
Uniquely aligned	2366811398	0.89	1686208471	0.88
Non-duplicates	2312044964	0.87	1641590824	0.85
MAPQ > = 13	2225473345	0.84	1585773977	0.83
Proper pairs	1112724850	-	792884037	-
Whole-genome coverage	74.2 X		52.6 X
	I1_M_cellular		G1_M_cellular
	Number of reads	Proportion of total	Number of reads	Proportion of total
Total	1091176962	1	903802456	1
Aligned	1056822490	0.97	888679846	0.98
Uniquely aligned	1023380388	0.94	860508538	0.95
Non-duplicates	1019233466	0.93	858226379	0.95
MAPQ > = 13	983181449	0.90	838372718	0.93
Proper pairs	491581650	-	419209864	-
Whole-genome coverage	32.6 X		27.4 X