. Author manuscript; available in PMC: 2016 Jul 1.

Published in final edited form as: Genet Epidemiol. 2015 Feb 6;39(5):385–394. doi: 10.1002/gepi.21888

Table 2. Case-only analysis results passing Bonferroni correction in Asian and European cases.

(SNPs pruned to have r² < 0.01)

Sample	GENE1	GENE2	SNP1	SNP2	Case Only	Epistatic Test^*
Asian	WNT9A	COL8A1	rs681239 (chr1)	rs704574 (chr3)	1.63E-06	3.85E-04
	WNT9A	COL8A1	rs681239 (chr1)	rs792835 (chr3)	2.26E-06	6.46E-04
European	WNT2B	WNT5A	rs3790604 (chr1)	rs358817 (chr3)	4.08E-06	2.94E-04^†
	WNT2B	WNT5A	rs3790604 (chr1)	rs3856709 (chr3)	1.15E-05	6.35E-04^†

Wald test results provided when epistatic method failed.

^†

Wald test for interaction term fitting a full model with one parameter for each SNP and one interaction term.