50 ml tubes |
Labware |
Sigma–Aldrich |
CLS430290 |
Originally not specified |
Hank's balanced salt solution (HBSS) |
Buffer |
Sigma–Aldrich |
H6648 |
Included during communication with authors. Original brand not specified |
Liberase TM |
Enzyme |
Roche |
05401127001 |
– |
Liberase TH |
Enzyme |
Roche |
05401151001 |
– |
DNase |
Enzyme |
Sigma–Aldrich |
DN25 |
– |
Phosphate buffered saline (PBS) without MgCl2 and CaCl2
|
Buffer |
Sigma–Aldrich |
D8537 |
Original brand not specified |
EDTA |
Chemical |
Included during communication with authors. Specific brand information will be left up to the discretion of the replicating lab and recorded later |
Bovine serum albumin (BSA) |
Chemical |
Sigma–Aldrich |
A3803 |
Included during communication with authors. Original brand not specified |
100 µm cell strainer |
Labware |
Corning |
431752 |
Original brand not specified |
2.5 ml syringe |
Labware |
Included during communication with authors. Specific brand information will be left up to the discretion of the replicating lab and recorded later |
Fetal bovine serum (FBS) |
Cell culture |
Sigma–Aldrich |
F0392 |
Original brand not specified |
Polypropylene (opaque) FACS tubes |
Labware |
Specific brand information will be left up to the discretion of the replicating lab and recorded later |
CD45 (clone 30-F11) PE-Cy5.5 antibody (rat IgG2b, kappa) |
Antibodies |
eBioscience |
35-0451-80 |
Use at 1:300 |
CD31 (clone 390) Pac.Blue antibody (rat IgG2a, kappa) |
Antibodies |
Invitrogen |
RM5228 |
Use at 1:200 |
CD34 (clone RAM34) PE antibody (rat IgG2a, kappa) |
Antibodies |
BD Pharmingen |
551387 |
Use at 1:50 |
Rat IgG2b, kappa isotype control PE-Cy5.5 |
Antibodies |
eBioscience |
35-4031 |
Use at 1:300 dilution. Originally not specified |
Rat IgG2a, kappa isotype control Pac.Blue |
Antibodies |
Invitrogen |
R2a28 |
Use at 1:200 dilution. Originally not specified |
Rat IgG2a, kappa isotype control PE |
Antibodies |
BD Pharmingen |
553930 |
Use at 1:50 dilution. Originally not specified |
7AAD |
Chemical |
BioLegend |
420403 |
Use at 1:1000. Original brand not specified |
Flow cytometric cell sorter |
Instrument |
BD Pharmingen |
FACSAria II |
Original from Beckman Coulter |
FlowJo |
Software |
– |
– |
– |
TRI reagent |
Chemical |
Sigma–Aldrich |
T9424 |
Replaces RNA extraction kit from Qiagen |
Oligo dT (18) |
Nucleic acid |
Life Technologies |
SO132 |
Included during communication with authors. Original brand not specified |
Oligo dT (23), Anchored |
Nucleic acid |
Sigma–Aldrich |
O4387 |
Included during communication with authors. Original was Oligo dT (24). Original brand not specified |
dNTPs (10 mM) |
Chemical |
Sigma–Aldrich |
D7295 |
Included during communication with authors. Original brand not specified |
25 mM MgCl2
|
Chemical |
Sigma–Aldrich |
M8787 (part of Sigma–Aldrich D4545 from Protocol 1) |
Included during communication with authors. Original brand not specified |
Superscript II (with tube of 5× buffer and 100 mM DTT) |
Enzyme |
Life Technologies |
18064-014 |
Included during communication with authors |
RNase inhibitor |
Enzyme |
Sigma–Aldrich |
R1274 |
Included during communication with authors. Original was RNasin |
POSTN 5′ primer |
Nucleic acid |
Sequences provided by original authors; specific brand information will be left up to the discretion of the replicating lab and recorded later |
POSTN 3′ primer |
Nucleic acid |
GAPDH 5′ primer |
Nucleic acid |
GAPDH 3′ primer |
Nucleic acid |
Power SYBR green PCR master mix |
Buffer |
Life Technologies |
4368577 |
– |
Real-time PCR system |
Equipment |
Applied Biosystems StepOne |
– |
Original was from Roche or a StepOnePlus from Applied Biosystems |