Skip to main content
. 2015 Jan 10;134(2):2. doi: 10.1007/s00214-014-1600-8

Table 2.

Average electrostatic potential ϕ(rI) and associated root-mean-square fluctuation (rmsf) at a sodium ion site, average physical potential energy per water atom in the restraint region u~s and associated rmsf, as well as total average restraint energy Vrestr and average restraint energy per water atom in the restraint region Vrestr monitored during 1 ns simulation of a hydrated sodium ion without (“unres.”) and with application of a polarization restraint (Eq. 26) to the Born polarization (Eq. 30, using ϵS=66.6) within the reported ranges of 1.0–1.4, 1.0–1.9, 1.1–1.9 and 1.2–1.9 nm from the ion. u~s was calculated for the range 0.0–1.4 nm for unrestrained simulations or for the restraining range in restrained simulations (Eqs. 45 and 47)

Scheme Res. range (nm) ϕ(rI) (rmsf) [kJmol-1e-1] u~s (rmsf) [kJmol-1] Vrestr [kJmol-1] vrestr [kJmol-1]
BM Unres. −657.72 (43.65) −27.67 (0.21)
1.0–1.4 −655.89 (44.90) −27.19 (0.31) 4,985.8 7.1
1.0–1.9 −656.43 (44.83) −27.19 (0.15) 10,895.8 4.6
1.1–1.9 −660.72 (43.97) −27.32 (0.17) 9,984.7 4.5
1.2–1.9 −660.41 (43.85) −27.41 (0.18) 8,822.9 4.3
CM Unres. −812.22 (45.66) −27.95 (0.22)
1.0–1.4 −788.98 (47.58) −27.28 (0.32) 5,944.1 8.5
1.0–1.9 −792.51 (47.39) −27.49 (0.17) 13,284.2 5.6
1.1–1.9 −798.73 (46.89) −27.61 (0.17) 11,919.1 5.3
1.2–1.9 −803.56 (46.58) −27.69 (0.17) 10,658.6 5.1
BA Unres. −654.57 (43.04) −27.71 (0.32)
1.0–1.4 −651.95 (44.30) −26.97 (0.56) 4,988.1 7.2
1.0–1.9 −651.78 (45.22) −27.22 (0.25) 11,093.5 4.7
1.1–1.9 −654.68 (44.87) −27.34 (0.25) 9,924.6 4.4
1.2–1.9 −654.32 (43.97) −27.44 (0.26) 8,990.5 4.3