Table 2.
Average electrostatic potential and associated root-mean-square fluctuation (rmsf) at a sodium ion site, average physical potential energy per water atom in the restraint region and associated rmsf, as well as total average restraint energy and average restraint energy per water atom in the restraint region monitored during 1 ns simulation of a hydrated sodium ion without (“unres.”) and with application of a polarization restraint (Eq. 26) to the Born polarization (Eq. 30, using ) within the reported ranges of 1.0–1.4, 1.0–1.9, 1.1–1.9 and 1.2–1.9 nm from the ion. was calculated for the range 0.0–1.4 nm for unrestrained simulations or for the restraining range in restrained simulations (Eqs. 45 and 47)
Scheme | Res. range (nm) | (rmsf) [ | (rmsf) [ | [] | [] |
---|---|---|---|---|---|
BM | Unres. | −657.72 (43.65) | −27.67 (0.21) | – | – |
1.0–1.4 | −655.89 (44.90) | −27.19 (0.31) | 4,985.8 | 7.1 | |
1.0–1.9 | −656.43 (44.83) | −27.19 (0.15) | 10,895.8 | 4.6 | |
1.1–1.9 | −660.72 (43.97) | −27.32 (0.17) | 9,984.7 | 4.5 | |
1.2–1.9 | −660.41 (43.85) | −27.41 (0.18) | 8,822.9 | 4.3 | |
CM | Unres. | −812.22 (45.66) | −27.95 (0.22) | – | – |
1.0–1.4 | −788.98 (47.58) | −27.28 (0.32) | 5,944.1 | 8.5 | |
1.0–1.9 | −792.51 (47.39) | −27.49 (0.17) | 13,284.2 | 5.6 | |
1.1–1.9 | −798.73 (46.89) | −27.61 (0.17) | 11,919.1 | 5.3 | |
1.2–1.9 | −803.56 (46.58) | −27.69 (0.17) | 10,658.6 | 5.1 | |
BA | Unres. | −654.57 (43.04) | −27.71 (0.32) | – | – |
1.0–1.4 | −651.95 (44.30) | −26.97 (0.56) | 4,988.1 | 7.2 | |
1.0–1.9 | −651.78 (45.22) | −27.22 (0.25) | 11,093.5 | 4.7 | |
1.1–1.9 | −654.68 (44.87) | −27.34 (0.25) | 9,924.6 | 4.4 | |
1.2–1.9 | −654.32 (43.97) | −27.44 (0.26) | 8,990.5 | 4.3 |