Table 2. Genome-wide significant loci and corresponding trans-ethnic results for sRAGE levels in whites and blacks.
SNP a | Gene | Chr:base pair position | Whites | Blacks | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
A1 b /A2 | A1 frequency | Β c | P | D’ | r2 d | A1 frequency | β | P | D’e | r2 e | |||
rs2854050 | NOTCH4 | 6:32185605 | A/G | 0.06 | -0.50 | 2.13e-11 | NA | NA | 0.03 | -0.21 | 0.20301 | 1.0 | 0.003 |
rs2071288 | AGER | 6:32149260 | T/C | 0.005 | -0.43 | 0.10 | 1.0 | 0.0 | 0.10 | -0.56 | 2.22e-08 | NA | NA |
rs2070600 | AGER | 6:32151443 | T/C | 0.04 | -0.67 | 7.26e-16 | 0.92 | 0.84 | 0.01 | -0.63 | 0.017903 | 1.0 | 0.001 |
aFrom dbSNP build 37
bA1 is the minor allele in whites
cMean change in ln(sRAGE) for Allele 1 vs. Allele 2
dWith rs2854050 (index SNP from GWAS in whites)
eWith rs2071288 (index SNP from GWAS in blacks)