Table 6. The assembled NGA50 contig size in kilo-bases for SOAPdenovo.
The “-d0” and “-d1” are parameters to SOAPdenovo instructing the assemblers to use all 31-mers or to ignore the 31-mers occurring only once. For MaSuRCA, which incorporates QuorUM, the result is in parentheses.
| Corrector | Rhodobacter | Staphylococcus | Mouse C16 | |||
|---|---|---|---|---|---|---|
| -d0 | -d1 | -d0 | -d1 | -d0 | -d1 | |
| none | 0. | 2.7 | 0. | 4.8 | 0.64 | 1.5 |
| Coral | 0. | 3.4 | 0.67 | 16 | - | - |
| Echo | 0. | 3.1 | 0.92 | 9.1 | - | - |
| HiTec | 0.96 | 2.3 | 3.0 | 8.5 | - | - |
| Quake | 2.9 | 1.6 | 10 | 5.7 | 1.7 | 1.7 |
| SGA | 3.4 | 2.3 | 8.4 | 5.9 | 1.4 | 1.7 |
| Racer | 1.2 | 2.5 | 5.2 | 7.8 | 1.2 | 1.4 |
| Musket | 0.53 | 2.9 | 2.1 | 9.5 | 1.2 | 1.4 |
| QuorUM | 6.6 | 5.9 | 19 | 16.206 | 1.7 | 1.7 |
| MaSuRCA | (19) | (33) | (5.7) | |||