TABLE 5.
Species | Total no. of isolates | No. of isolates identified at indicated score or confidence value and no. of runs needed for correct ID |
|||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Bruker Biotyper ≥ 1.8 |
Vitek MS Saramis ≥ 90% |
Vitek MS v3.0 ≥ 90% |
|||||||||||
No ID | 1 | 2 | 3 | No ID | 1 | 2 | 3 | No ID | 1 | 2 | 3 | ||
Rapid growers | |||||||||||||
M. abscessus | 19 | 2 | 10 | 4 | 3 | 3 | 13 | 2 | 1 | 3 | 12 | 1 | 3 |
M. chelonae | 13 | 11 | 2 | 0 | 0 | 0 | 11 | 2 | 0 | 0 | 12 | 1 | 0 |
M. fortuitum complex | 16 | 2 | 14 | 0 | 0 | 2 | 13 | 0 | 1 | 3 | 9 | 3 | 1 |
M. immunogenum | 4 | 0 | 4 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 4 | 0 | 0 |
M. moriokaense | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
M. mucogenicum complex | 13 | 3 | 8 | 1 | 1 | 0 | 11 | 1 | 1 | 1 | 12 | 0 | 0 |
M. neoaurum | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
M. phlei | 2 | 1 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 1 |
M. smegmatis complex | 3 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 2 | 0 | 0 |
Slow growers | |||||||||||||
M. gordonae | 12 | 1 | 8 | 0 | 3 | 3 | 7 | 0 | 2 | 0 | 12 | 0 | 0 |
M. haemophilum | 3 | 0 | 3 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 3 | 0 | 0 |
M. kansasii | 12 | 0 | 11 | 0 | 1 | 0 | 6 | 2 | 4 | 0 | 7 | 4 | 1 |
M. kubicae | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
M. avium complex | 13 | 0 | 7 | 6 | 0 | 1 | 11 | 1 | 0 | 2 | 9 | 0 | 2 |
M. marinum complex | 3 | 0 | 3 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 3 | 0 | 0 |
M. scrofulaceum complex | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 |
M. simiae complex | 5 | 1 | 2 | 1 | 1 | 2 | 2 | 1 | 0 | 2 | 2 | 0 | 1 |
M. szulgai | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
M. tuberculosis complex | 16 | 0 | 13 | 3 | 0 | 0 | 15 | 0 | 1 | 0 | 16 | 0 | 0 |
M. terrae complex | 13 | 2 | 9 | 2 | 0 | 6 | 0 | 0 | 7 | 2 | 11 | 0 | 0 |
M. xenopi | 4 | 0 | 3 | 1 | 0 | 0 | 4 | 0 | 0 | 0 | 4 | 0 | 0 |
M. parascrofulaceum | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
Total | 157 | 29 | 99 | 19 | 10 | 22 | 106 | 11 | 18 | 16 | 121 | 11 | 9 |
ID, identification.