Table 1.

Number and significance of differently expressed genes.

CancerType	BRCA	COADREAD	HNSC	KIRC	LIHC	LUAD	LUSC	PRAD	THCA
Diff-Expressed	8556	4139	2226	8210	3385	6422	7981	3133	5727
TF	772	369	233*	667	309	556	704	291	556
RBP	383***	244***	102*	303	148	354***	420***	144*	192
lncRNA	83	30	14	89	24	46	67	33	54
Other	7352	3522	1890	7175***	2920	5506	6838	2680	4943
allOnco	1020*	445*	313***	960***	429***	752***	924***	385***	661***
COSMIC	217*	101	77***	218**	101**	177**	218***	67	150*
Fshift	55*	29*	17	58**	26*	47*	50*	15	34
Germ	44*	28**	11	40*	22*	38**	39*	14	32*
Missense	86*	42*	26*	81*	40*	71**	77*	25	59*
LDel	18	11	6	20*	9	15	12	1	13
Splic	31	16	10	36*	16	32*	30	8	19
Trans	127	55	48**	131*	53	99	124*	38	88

P < 0.05 *, P < 0.001 **, P < 0.0001 ***

Fshift: frameshift, LDel: large deletions, Trans: translocations, Splic: splicing mutations, and Germ: germline.