TABLE 1.
Pan-genome DNA microarray analysis of a subset of isolates selected from the PFGE and MLST studies as well as other isolates representing other species of Cronobacter and their nearest neighbors
| Isolate group and ID | Species | Serotype | MLST ST no. | ST clonal complex |
|---|---|---|---|---|
| Cronobacter isolates selected from PFGE and MLST assays | ||||
| 206N | Cronobacter sakazakii | O:2 | 4 | ST-4 |
| 207N | Cronobacter sakazakii | O:2 | 4 | ST-4 |
| 208N | Cronobacter sakazakii | O:2 | 4 | ST-4 |
| 255N | Cronobacter sakazakii | O:2 | 4 | ST-4 |
| 306N | Cronobacter sakazakii | O:2 | 4 | ST-4 |
| CQ2 | Cronobacter sakazakii | O:2 | 4 | ST-4 |
| CQ3 | Cronobacter sakazakii | O:2 | 4 | ST-4 |
| CQ4 | Cronobacter sakazakii | O:2 | 4 | ST-4 |
| CQ5 | Cronobacter sakazakii | O:2 | 4 | ST-4 |
| CQ6 | Cronobacter sakazakii | O:2 | 4 | ST-4 |
| CQ13 | Cronobacter sakazakii | O:2 | 4 | ST-4 |
| CQ14 | Cronobacter sakazakii | O:2 | 4 | ST-4 |
| CQ15 | Cronobacter sakazakii | O:2 | 4 | ST-4 |
| CQ17 | Cronobacter sakazakii | O:2 | 4 | ST-4 |
| CQ19 | Cronobacter sakazakii | O:2 | 4 | ST-4 |
| CQ24 | Cronobacter sakazakii | O:4 | 1 | ST-1 |
| CQ25 | Cronobacter sakazakii | O:4 | 1 | ST-1 |
| CQ26 | Cronobacter sakazakii | O:4 | 1 | ST-1 |
| CQ31 | Cronobacter sakazakii | O:2 | 4 | ST-4 |
| CQ32 | Cronobacter sakazakii | O:1 | 1 | ST-1 |
| CQ34 | Cronobacter sakazakii | O:1 | 1 | ST-1 |
| CQ35 | Cronobacter sakazakii | O:1 | 1 | ST-1 |
| CQ36 | Cronobacter sakazakii | O:1 | 1 | ST-1 |
| CQ37 | Cronobacter sakazakii | O:3 | 1 | ST-1 |
| CQ38 | Cronobacter sakazakii | O:1 | 1 | ST-1 |
| CQ40 | Cronobacter sakazakii | O:1 | 1 | ST-1 |
| CQ42 | Cronobacter sakazakii | O:1 | 1 | ST-1 |
| CQ43 | Cronobacter sakazakii | O:1 | 1 | ST-1 |
| CQ44 | Cronobacter sakazakii | O:1 | 1 | ST-1 |
| CQ45 | Cronobacter sakazakii | O:1 | 1 | ST-1 |
| CQ46 | Cronobacter sakazakii | O:1 | 1 | ST-1 |
| CQ61 | Cronobacter sakazakii | O:1 | 1 | ST-1 |
| CQ68 | Cronobacter sakazakii | O:1 | 57 | ST-1 |
| CQ75 | Cronobacter sakazakii | O:3 | 8 | ST-8 |
| CQ83 | Cronobacter sakazakii | O:4 | 6 | Unknown |
| CQ92 | Cronobacter sakazakii | O:4 | 6 | Unknown |
| CQ99 | Cronobacter sakazakii | O:4 | 6 | Unknown |
| CQ111 | Cronobacter sakazakii | O:3 | 4 | ST-4 |
| CQ112 | Cronobacter sakazakii | O:4 | 1 | ST-1 |
| CQ114 | Cronobacter sakazakii | O:2 | 31 | Unknown |
| CQ115 | Cronobacter sakazakii | O:2 | 31 | Unknown |
| CQ116 | Cronobacter sakazakii | O:2 | 31 | Unknown |
| CQ121 | Cronobacter sakazakii | O:3 | 4 | ST-4 |
| CQ122 | Cronobacter sakazakii | O:3 | 4 | ST-4 |
| CQ123 | Cronobacter sakazakii | O:3 | 4 | ST-4 |
| CQ124 | Cronobacter sakazakii | O:3 | 4 | ST-4 |
| CQ126 | Cronobacter sakazakii | O:3 | 4 | ST-4 |
| CQ127 | Cronobacter sakazakii | O:3 | 4 | ST-4 |
| CQ128 | Cronobacter sakazakii | O:3 | 4 | ST-4 |
| E654 | Cronobacter sakazakii | O:1 | 1 | ST-1 |
| E657 | Cronobacter sakazakii | O:1 | 1 | ST-1 |
| E755 | Cronobacter sakazakii | O:4 | 8 | ST-8 |
| E758 | Cronobacter sakazakii | O:4 | 8 | ST-8 |
| E760 | Cronobacter sakazakii | O:2 | 264 | Unknown |
| E788 | Cronobacter sakazakii | O:3 | 4 | ST-4 |
| ATCC BAA-894 | Cronobacter sakazakii | O:1 | 1 | ST-1 |
| CQ41 | Cronobacter malonaticus | O:2 | 129 | ST-129 |
| CQ62 | Cronobacter malonaticus | O:2 | 129 | ST-129 |
| ATCC 51329 | Cronobacter muytjensii | O:2 | 81 | ST-81 |
| Other Cronobacter species included as internal controls | ||||
| CI825 | Cronobacter malonaticus | O:2 | 7 | ST-7 |
| 464 | Cronobacter dublinensis | O:1 | 79 | |
| CFS237 | Cronobacter dublinensis | O:1 | 106 | |
| E515 | Cronobacter dublinensis | O:2 | 80 | ST-80 |
| z3032 | Cronobacter turicensis | O:1 | 19 | ST-24 |
| 797-2 | Cronobacter universalis | O:1 | 54 | |
| LMG26250 | Cronobacter condimenti | Unknown | 98 | |
| Nearest neighbors used as controls | ||||
| STM | Salmonella enterica serovar Typhimurium | |||
| 214 | Klebsiella pneumoniae | |||
| 508 | Siccibacter turicensis | |||
| z1159 | Franconibacter helveticus | |||
| z513 | Franconibacter helveticus | |||
| 1160 | Franconibacter pulveris | |||
| 601 | Franconibacter pulveris |