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. 2015 Jun 18;3:e1029. doi: 10.7717/peerj.1029

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© 2015 Asnicar et al.

This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.

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We developed a conversion framework called “export2graphlan” that can deal with several output formats from different analysis pipelines, generating the necessary input files for GraPhlAn. Export2graphlan directly supports MetaPhlAn2, LEfSe, and HUMAnN output files. In addition, it can also accept BIOM files (both version 1 and 2), making GraPhlAn available for tools supporting this format including the QIIME and mothur systems. The tools can be ran on local machine as well as through the Galaxy web system using the modules reported in green boxes.