Table 1.
List of Imprinted Transcripts Identified in This Study.
| Region in mm10 | Gene Name | Liver | HYP | VNO | Status | SNPs Fst > 0.8 |
|---|---|---|---|---|---|---|
| chr1:63273269–63314575 | Zdbf2 | − | pat > 0.95 | − | Known | — |
| chr1:63445904–63596515 | Adam23 | + | pat > 0.55 | + | Knowna,b | — |
| chr2:152669461–152708668 | H13 (short) | − | pat > 0.8 | pat > 0.95 | Known | — |
| chr2:152669461–152708668 | H13 (long) | mat > 0.7 | mat > 0.8 | mat > 0.6 | Known | — |
| chr2:152780668–152831682 | Bcl2l1 | + | pat > 0.55 | + | Knowna | — |
| chr2:157556362–157566361 | Blcap | + | mat > 0.62 | + | Known | — |
| chr2:157560110–157562519 | Nnat | − | pat > 0.99 | pat > 0.75 | Known | — |
| chr6:4674350–4747204 | Sgce | − | pat > 0.95 | pat > 0.95 | Known | — |
| chr6:4747306–4760516 | Peg10 | − | pat > 0.95 | − | Known | — |
| chr6:4903320–5165661 | Ppp1r9a | − | mat > 0.55 | + | Known | — |
| chr6:5383386–5433021 | Asb4 | − | mat > 0.8 | − | Known | — |
| chr6:30401909–30455174 | Klhdc10 | + | mat > 0.55 | + | Knowna | — |
| chr6:30738050–30748466 | Mest | − | pat > 0.95 | pat > 0.95 | Known | — |
| chr6:30804784–30807552 | Copg2os2 | − | pat > 0.95 | − | Known | — |
| chr6:30809559–30896760 | Copg2 | + | mat > 0.7 | + | Known | — |
| chr6:58833700–58920396 | Herc3 | − | mat > 0.65 | + | Known | — |
| chr6:58905233–58907126 | Nap1l5 | − | pat > 0.99 | pat > 0.95 | Known | — |
| chr7:6671269–6672888 | AK003710 | − | mat > 0.9 | − | New | — |
| chr7:6675443–6696432 | Zim1 | − | mat > 0.9 | − | Known | — |
| chr7:6703901–6730554 | Peg3 | pat > 0.95 | pat > 0.99 | pat > 0.99 | Known | — |
| chr7:6730741–6967220 | Usp29 | − | pat > 0.99 | − | Known | — |
| chr7:59228750–59306727 | Ube3a | + | mat > 0.8 | + | Known | — |
| chr7:59262923–59263934 | AK038761 | − | pat > 0.99 | − | Newc | — |
| chr7:59281852–59290247 | A230073K19Rik | − | pat > 0.99 | − | Newc | 1 |
| chr7:59307924–59324149 | C230091D08Rik | + | mat > 0.8 | + | Knowna | — |
| chr7:59327318-59328016 | AK020709 | − | pat > 0.95 | − | New | — |
| chr7:59937467–59975759 | D7Ertd715e | − | pat > 0.99 | − | Newc | 4 |
| chr7:59976740–59980676 | AK139082 | − | pat > 0.99 | − | Newc | 1 |
| chr7:59982501–60140219 | Snrpn/Snurf | pat > 0.99 | pat > 0.99 | pat > 0.99 | Known | 1 |
| chr7:61010256–61012230 | AK046019 | − | pat > 0.99 | − | Known | — |
| chr7:61072752–61089737 | AK038418 | − | pat > 0.95 | − | New | — |
| chr7:61089568–61221965 | DOKist4 | − | pat > 0.99 | − | Knowna | — |
| chr7:61529410–61615327 | B230209E15Rik | − | pat > 0.95 | − | New | — |
| chr7:61705850–61927574 | A230057D06Rik | − | pat > 0.95 | − | New | — |
| chr7:61751446–61753692 | AK031915/AK046509 | − | pat > 0.99 | + | New | — |
| chr7:61930789–61982715 | ENSMUST00000181804 | − | pat > 0.99 | − | New | — |
| chr7:61930944–61934821 | AK048029 | − | pat > 0.99 | − | New | — |
| chr7:62348277–62349927 | Ndn | − | pat > 0.99 | pat > 0.95 | Known | — |
| chr7:62376979–62381640 | Magel2 | − | pat > 0.99 | − | Known | — |
| chr7:128439777–128461513 | Tial1 | + | mat > 0.65 | + | New | — |
| chr7:128611365–128696436 | Inpp5f | + | pat > 0.8 | + | Known | — |
| chr7:142575532–142578146 | H19 | − | − | mat > 0.99 | Known | — |
| chr7:142650768–142658804 | Igf2 | − | mat > 0.55 | pat > 0.8 | Known | — |
| chr7:143107254–143427042 | Kcnq1 | − | − | pat > 0.99 | Known | — |
| chr7:143458339–143461050 | Cdkn1c | − | − | mat > 0.95 | Known | — |
| chr9:89909775–90026979 | Rasgrf1 | − | pat > 0.95 | − | Known | — |
| chr10:13090788–13131695 | Plagl1 | − | pat > 0.99 | pat > 0.99 | Known | — |
| chr11:11814101–11890408 | Ddc | + | mat > 0.55 | − | Known | — |
| chr11:11930499–12037420 | Grb10 | − | pat > 0.95 | mat > 0.95 | Known | — |
| chr11:22972005–22976496 | Zrsr1 | pat > 0.95 | pat > 0.95 | pat > 0.95 | Known | — |
| chr11:22899728–22982284 | Commd1/Murr | + | mat > 0.85 | + | Known | — |
| chr12:108860030–108893211 | Wars | + | pat > 0.55 | + | Knowna,b | — |
| chr12:109032182–109068217 | Begain | − | pat > 0.75 | − | Known | — |
| chr12:109453455–109463336 | Dlk1 | − | pat > 0.95 | − | Known | — |
| chr12:109542023–109568594 | Meg3 | − | mat > 0.95 | mat > 0.95 | Known | — |
| chr12:109589193–109600330 | Rtl1 | − | mat > 0.8 | − | Known | — |
| chr12:109603945–109661711 | Rian | − | mat > 0.99 | mat > 0.99 | Known | — |
| chr12:109734825–109749457 | Mirg | − | mat > 0.99 | − | Known | — |
| chr13:107413865–107414767 | ENSMUST00000061241 | mat > 0.65 | mat > 0.65 | + | New | |
| chr15:72506991–72508007 | AK039650 | − | mat > 0.95 | − | Knowna | — |
| chr15:72589620–73061204 | Trappc9 | + | mat > 0.7 | + | Known | — |
| chr15:72805600–72810324 | Peg13 | pat > 0.99 | pat > 0.99 | pat > 0.99 | Known | 5 |
| chr15:73098490–73099318 | DQ715667 | − | mat > 0.7 | + | Knowna | — |
| chr15:73101625–73184947 | Eif2c2 | + | mat > 0.7 | + | Knowna | — |
| chr17:77674376–77674702 | ENSMUST00000168236 | mat > 0.55 | mat > 0.55 | mat > 0.6 | New | — |
| chr18:12972252–12992948 | Impact | pat > 0.8 | pat > 0.95 | pat > 0.75 | Known | — |
Note.—Expression status is designed as “+” when expressed but not imprinted in a given tissue, as “−” when not expressed, and as the degree of maternal (mat) or paternal (pat) bias when imprinted. Chromosomal regions with clustered transcripts are separated by horizontal lines.
aFirst described by DeVeale et al. (2012).
bConfirmed by pyrosequencing in DeVeale et al. (2012).
cConfirmed by pyrosequencing in this study.