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. Author manuscript; available in PMC: 2016 Jul 1.
Published in final edited form as: Insect Biochem Mol Biol. 2015 Jan 20;62:2–10. doi: 10.1016/j.ibmb.2015.01.007

Table 3. Numbers of genes, transcripts, and proteins predicted by different programs.

program assembly genes transcripts proteins unique proteins
MAKER2 OGS 1.0 18,750 20,317 22,310 22,310
Cufflinks Cufflinks 3.0 36,027 62,497 53,102 37,316
Trinity Trinity 4.0 193,161 317,062 155,825 57,593
Oases Oases 4.0 88,397 552,733 304,367 130,474