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. 2015 May 9;43(11):5630–5646. doi: 10.1093/nar/gkv355

Table 2. Selective genes for which SLQS have been located within.

Gene Symbol Description RefSeq ID SLQS ID Placement Distance from TSS Gene segment Regulatory elements
RICTOR Homo sapiens RPTOR independent companion of MTOR, complex 2, mRNA. NM_152756 G4ST05039110287 non-template −29 Promoter Yes
RAB3D H. sapiens RAB3D, member RAS oncogene family, mRNA. NM_004283 G4ST19011311393 template −49 Promoter Yes
G4ST19011311397 template −53 Promoter Yes
RAB12 H. sapiens RAB12, member RAS oncogene family, mRNA. NM_001025300 G4ST18008599361 template −58 Promoter Yes
CD24 H. sapiens CD24 molecule, mRNA. NM_013230 G4ST24019614192 non-template −99 Promoter Yes
MYBL1 H. sapiens v-myb myeloblastosis viral oncogene homologue (avian)-like 1, transcript variant 1, mRNA. NM_001080416 G4ST08067688172 template −138 Promoter Yes
NDRG2 H. sapiens NDRG family member 2, transcript variant 3, mRNA. NM_016250 G4ST14020563933 template −158 Promoter Yes
G4ST14020563945 template −170 Promoter Yes
PRKRIR H. sapiens protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of P58 repressor, mRNA. NM_004705 G4ST11075769784 non-template −256 Promoter Yes
HIC1 H. sapiens hypermethylated in cancer 1, transcript variant 1, mRNA. NM_001098202 G4ST17001906034 template −285 Promoter Yes
NM_001098202 G4ST17001906030 template −289 Promoter Yes
NM_001098202 G4ST17001906024 template −293 Promoter Yes
PDK1 H. sapiens pyruvate dehydrogenase kinase, isozyme 1, nuclear gene encoding mitochondrial protein, mRNA. NM_002610 G4ST02173128695 non-template −298 Promoter Yes
IGF2BP2 H. sapiens insulin-like growth factor 2 mRNA binding protein 2, transcript variant 1, mRNA. NM_006548 G4ST03187025840 non-template −319 Promoter Yes
CCNY H. sapiens cyclin Y, transcript variant 1, mRNA. NM_145012 G4ST10035665408 non-template −373 Promoter Yes
RET H. sapiens ret proto-oncogene, transcript variant 2, mRNA. NM_020630 G4ST10042892416 template −80 Promoter Yes
G4ST10042891022 template −1472 Promoter Yes
G4ST10042891015 template −1477 Promoter Yes
MDK H. sapiens midkine (neurite growth-promoting factor 2), transcript variant 2, mRNA. NM_001012334 G4ST11046359281 template 5′-UTR Yes
PIM1 H. sapiens pim-1 oncogene, mRNA. NM_002648 G4ST06037246104 template 5′-UTR Yes
PDCD4 H. sapiens programmed cell death 4 (neoplastic transformation inhibitor), transcript variant 1, mRNA. NM_014456 G4ST10112621932 template Intron 1 Yes
ARHGAP31 H. sapiens Rho GTPase activating protein 31, mRNA. NM_020754 G4ST03120547683 template Intron 1 Yes
ELFN1 H. sapiens extracellular leucine-rich repeat and fibronectin type III domain containing 1, mRNA. NM_001128636 G4ST07001717478 non-template Intron 1
MYO9B H. sapiens myosin IXB, transcript variant 2, mRNA. NM_004145 G4ST19017166594 template Exon 22
BMP8A H. sapiens bone morphogenetic protein 8a, mRNA. NM_181809 G4ST01039729840 non-template −28 Promoter Yes
MYT1L H. sapiens myelin transcription factor 1-like, mRNA. NM_015025 G4ST02001786748 template Intron 22