Table 4.
Upregulated genes in hormone-treated shoots with annotations in the vegetative to reproductive phase transition and flowering development.
| comparisons | MgPUTs ID | Go annotation | Log2-fold | Annotation |
|---|---|---|---|---|
| CK1 vs. TR1 | isotig07103 | GO:0009908 (flower development), GO:0010154 (fruit development) | 1.83 | Myb-related protein MYBAS1 |
| isotig14814 | GO:0010228 (vegetative to reproductive phase transition of meristem) | 1.35 | LRR receptor-like serine/threonine-protein kinase ERL | |
| isotig15725 | GO:0009553 (embryo sac development) | 0.53 | Very-long-chain enoyl-CoA reductase | |
| isotig16158 | GO:0048575 (short-day photoperiodism, flowering), GO:0010182 (sugar mediated signaling pathway) | 0.25 | Ubiquinol oxidase 4, chloroplastic/chromoplastic | |
| isotig29943 | GO:0007283 (spermatogenesis) | 0.53 | RNA pseudourine synthase 2, chloroplastic | |
| isotig31981 | GO:0009793 (embryo development ending in seed dormancy) | 2.08 | Fatty acid amide hydrolase | |
| isotig70756 | GO:0009910 (negative regulation of flower development) | 0.59 | Dolichol kinase | |
| CK3 vs. TR3 | isotig16582 | GO:0048443 (stamen development) | 1.37 | Purple acid phosphatase 2 |
| isotig24901 | GO:0003006 (developmental process involved in reproduction) | 0.5 | Serine carboxypeptidase-like 35 | |
| isotig30606 | GO:0010228 (vegetative to reproductive phase transition of meristem) | 0.31 | 60S ribosomal protein L17-2 | |
| CK4 vs. TR4 | isotig07103 | GO:0009908 (flower development), GO:0010154 (fruit development) | 1.72 | Myb-related protein MYBAS1 |
| isotig08231 | GO:0009553 (embryo sac development) | 0.38 | WAS protein family homolog 1 | |
| isotig16158 | GO:0048575 (short-day photoperiodism, flowering) | 0.42 | Ubiquinol oxidase 4, chloroplastic/chromoplastic | |
| isotig18119 | GO:0010154 (fruit development), GO:0009911 (positive regulation of flower development) | 0.41 | Methyltransferase-like protein 16 | |
| isotig30702 | GO:0007291 (sperm individualization), GO:0007290 (spermatid nucleus elongation) | 0.22 | NA | |
| isotig44844 | GO:0048510 (regulation of timing of transition from vegetative to reproductive phase) | 1.19 | 1-aminocyclopropane-1-carboxylate oxidase | |
| isotig83604 | GO:0009553 (embryo sac development), GO:0009908 (flower development), GO:0009909 (regulation of flower development) | 0.65 | NA |