Table 3.
Expression levels (in FPKM values) and read counts (in numbers of read uniquely aligned read pairs) of additional nitrogen metabolism genes not plotted in Figure 3.
| ID | Annotation | FPKM (read count) | ||
|---|---|---|---|---|
| Replete | P-limited | N-limited | ||
| 63323 | Putative urea transporter | 57.3 (1159) | 13.0 (115) | 213.2 (2589) |
| 135159_1 | Putative nitrate transporter | 877.6 (3185) | 53.6 (85) | 2527 (5505) |
| 19338_2 | Carbamoyl-phosphate synthase, large subunit | 10.0 (330) | 0.1 (2) | 10.0 (198) |
| 8693_1 | Carbamoyl-phosphate synthase, large subunit | 16.1 (731) | 0.3 (6) | 14.6 (400) |
| 14637 | Carbamoyl-phosphate synthase, large subunit | 18.9 (945) | 1.6 (36) | 12.1 (362) |
| 19322 | Carbamoyl-phosphate synthase, large subunit | 45.5 (1124) | 8.6 (93) | 40.9 (607) |
| 99020 | Carbamoyl-phosphate synthase, large subunit | 2.3 (81) | 0.1 (0) | 2.3 (48) |
| 19338_2 | Carbamoyl-phosphate synthase, large subunit | 10.0 (330) | 0.1 (2) | 10.0 (198) |
| 57610 | Xanthine dehydrogenase, molybdopterin binding subunit | 13.2 (391) | 5.7 (74) | 50.3 (896) |
| 18242 | Uracil-xanthine permease | 98.0 (4083) | 25.1 (458) | 948 (23705) |
| 55569 | Copper amine oxidase | 6.5 (54) | 0.6 (2) | 6.8 (34) |
| 62477_1 | Urease, alpha subunit | 10.9 (285) | 9.7 (111) | 41.5 (650) |
| 92575 | Argininosuccinate synthase | 39.7 (589) | 27.3 (177) | 321.9 (2870) |
| 63924 | Argininosuccinate lyase | 40.1 (679) | 10.0 (74) | 85.9 (873) |
Read counts of zero were converted to one when calculating FPKM values to avoid division by zero problems when the FPKM values were used to calculate fold changes between treatments.