Table 1.
DNA marker | nrITS | matK | trnL-F | trnS-trnG | psbA-trnH | Xdh | |||||
---|---|---|---|---|---|---|---|---|---|---|---|
Initialization | 94 °C | 240 s | 94 °C | 240 s | 94 °C | 240 s | 94 °C | 240 s | 94 °C | 240 s | cf. Górniak et al. [48] |
Denaturation | 94 °C | 40–50 s | 94 °C | 45 s | 94 °C | 40–50 s | 94 °C | 45 s | 94 °C | 45 s | |
Annealinga | 55 °C | 40–50 s | 48 °C | 40–50 s | 55 °C | 40–50 s | 52 °C | 50–60 s | 53 °C | 50 s | |
Extension | 72 °C | 50–60 s | 72 °C | 60 s | 72 °C | 50–60 s | 72 °C | 50–60 s | 72 °C | 50–60 s | |
Number of cycles | 30 | 30 | 30 | 30 | 30 | ||||||
Final extension | 72 °C | 420 s | 72 °C | 420 s | 72 °C | 420 s | 72 °C | 420 s | 72 °C | 420 s |
aInitially, the annealing temperatures for all regions were set to 53 °C; for samples with low yield, the temperatures were then adjusted to those specific for each region