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. 2015 Jun 24;10(6):e0131498. doi: 10.1371/journal.pone.0131498

Table 1. Sequence characteristics of the 18S rRNA gene from 8 species in the genus Acartia, and 184 other copepod species.

Molecules Length of Acartia (bp) Length (bp) GC Nt Nv Nc PI(%PI)
18S 1,689–1,787 1,694–1,742 48.5 1,878 974 854 784 (41.7)
TCs 849–869 859–862 49.1 864 258 603 178 (20.6)
CVs 829–938 834–881 47.8 1,014 716 251 606 (59.8)
V1 12–23 22–24 41.3 24 21 3 18 (75)
V2 184–214 189–213 45.9 245 178 59 149 (60.8)
V3 91–92 90–93 47.3 96 55 38 45 (46.9)
V4 213–242 219–256 45.9 286 188 70 165 (57.7)
V5 71–75 70–74 53.9 75 64 11 52 (69.3)
V7 86–141 74–93 48.0 100 68 30 57 (57)
V8 62–67 62–68 54.4 76 51 21 44 (57.9)
V9 85–97 91–98 49.4 112 91 19 76 (67.9)

18S, copepod 18S rRNA genes with the two ends trimmed (all the variable regions were intact); TCs, Total conserved region sequences in 18S; CVs, combination of all variable regions; V1-9, variable regions; GC, GC contents; Nt, total number of sites compared; Nc, total number of conserved sites; Nv, total number of variable sites; PI, parsimony-informative sites.