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. 2015 Jun 24;10(6):e0131498. doi: 10.1371/journal.pone.0131498

Table 2. Copepod 18S rRNA genes used in the statistical similarity analysis.

18S rRNA genes V regions Lengths of V regions (bp) Lengths of Sections (bp) Primers pairs for Sequence amplification Number of Sequences Number of orders Number of families Number of genus Number of species
Nearly-whole-length V1-9 738–785 1701–1851 226 7 70 134 185
Section 1 V1-3 302–327 481–544 Euk1A [43], Euk516 [43] 320 7 76 169 265
Section 2 V4-5 291–329 537–612 Ami6F1 [24], Ami9R [24] 410 7 82 179 309
Section 3 V7 83–108 125–150 #3 [44], #4_RC [44] 300 7 79 177 284
Section 4 V8 62–68 158–165 F–P [45], R–P [45] 390 7 82 178 301
Section 5 V9 91–98 107–139 1391F [27], EukB [27] 307 7 80 172 262