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. 2015 Feb 19;31(13):2202–2204. doi: 10.1093/bioinformatics/btv112

Fig. 1.

Fig. 1.

Example of VCF entries representing the same variant. Left panel aligns each allele to the reference genome, and the right panel represents the variant in VCF. (A) is not left-aligned (B) is neither left-aligned nor parsimonious, (C) is not parsimonious and (D) is normalized