Table 1.
Comparison of sRNA-seq web applications Oasis, MAGI (Kim et al., 2014), ISRNA (Luo et al., 2014), CPSS (Zhang et al., 2012), CAP-miRSeq (Sun et al., 2014) and mirTools2 (Wu et al., 2013)
| Feature | Oasis | MAGI | ISRNA | CPSS | CAP-miRSeq | mirTools2 |
|---|---|---|---|---|---|---|
| FASTQ compression | ✓ | ✓ | ✓ | ✓ | ||
| miRNA modification or SNV detection | ✓ | ✓ | ||||
| miRNA prediction | ✓ | ✓ | ✓ | ✓ | ✓ | |
| Differential expression (multiple samples) | ||||||
| • Two groups | ✓ | ✓ | ✓ | ✓ | ✓ | |
| • Multivariate | ✓ | |||||
| Classification | ✓ | |||||
| Novel miRNA target prediction | ✓ | ✓ | ✓ | ✓ | ||
| Pathway/GO analysis | ✓ | ✓ | ✓ | ✓ | ||
| Interactive visualization | ||||||
| • Server-side | ✓ | ✓ | ✓ | |||
| • Client-side | ✓ | |||||
| Modular analysis | ✓ | ✓ | ✓ | |||
| Integrated browser | ✓ | |||||
| Batch job submission (API) | ✓ | |||||
| Project database | ✓ | |||||