Table 2.
Server performance values for the dedicated dataset benchmark
| IEDB reference | Allele | Peptide length | Peptide count | Positive count | Measurement type | NetMHCpan |
SMM |
ANN |
ARB |
||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SRCC | AUC | SRCC | AUC | SRCC | AUC | SRCC | AUC | ||||||
| 1028554 | HLA-A*02:01 | 9 | 44 | 7 | IC50 | 0.696 | 0.888 | 0.581 | 0.898 | 0.620 | 0.828 | 0.507 | 0.761 |
| 1028554 | HLA-B*07:02 | 9 | 52 | 6 | IC50 | 0.617 | 0.772 | 0.661 | 0.851 | 0.698 | 0.884 | 0.654 | 0.757 |
| 1028554 | HLA-B*35:01 | 9 | 56 | 3 | IC50 | 0.364 | 0.679 | 0.206 | 0.591 | 0.273 | 0.566 | 0.260 | 0.642 |
| 1028554 | HLA-B*44:03 | 9 | 46 | 3 | IC50 | 0.457 | 0.612 | 0.466 | 0.752 | 0.559 | 0.651 | 0.249 | 0.558 |
| 1028554 | HLA-B*57:01 | 9 | 53 | 10 | IC50 | 0.619 | 0.863 | 0.331 | 0.765 | 0.519 | 0.944 | 0.124 | 0.628 |
| Total: | 251 | 29 | Average: | 0.551 | 0.763 | 0.449 | 0.771 | 0.534 | 0.775 | 0.359 | 0.669 | ||