Table 3.
Number of indels compared to the reference genome (‘Nipponbare’ IRGSP v.1) detected in the 11 cultivars
| Cultivar | Category | Indels | Indels (selected) |
|---|---|---|---|
| ‘Basilanon’ | tropical japonica | 234,431 | 22,815 |
| ‘Bei Khe’ | indica | 341,433 | 32,514 |
| ‘Bleiyo’ | indica | 336,533 | 34,069 |
| ‘Deng Pao Zhai’ | indica | 334,157 | 32,953 |
| ‘Kasalath’ | aus | 334,087 | 29,871 |
| ‘Khao Nam Jen’ | tropical japonica | 107,797 | 9,462 |
| ‘Khau Mac Kho’ | tropical japonica | 125,815 | 11,755 |
| ‘Koshihikari’ | temperate japonica | 24,898 | 1,648 |
| ‘Nona Bokra’ | indica | 347,557 | 35,921 |
| ‘Qiu Zao Zhong’ | indica | 324,021 | 31,215 |
| ‘Tupa 121-3’ | aus | 323,633 | 29,388 |