Table 1. The top enriched KEGG pathways for low risk genetic variants ranked by normalized enrichment score (NES).
Pathway | #GSS | #GLE | ES | NES | PV | FDR |
---|---|---|---|---|---|---|
ABC transporters | 44 | 23 | 0.6 | 3.4 | 0.001 | 0.06 |
Proteasome | 43 | 21 | 0.4 | 2.6 | 0.004 | 0.25 |
Propanoate metabolism | 32 | 13 | 0.5 | 2.5 | 0.002 | 0.25 |
Abbreviations: #GSS (gene set size for the pathway); #GLE (number of pathway genes in GSEA leading edge); ES (enrichment score), NES (normalized enrichment score), PV (p-value of ES), FDR (false discovery rate).