Table 2.
Ten most upregulated and downregulated lncRNAs in the carcinomas compared to the adjacent nontumor tissues by volcano plot
| Probe name | FC Absolute | Regulation | Seqname | Gene symbol | Source | Chromosome | Relationship | Associated gene name | Associated protein name |
|---|---|---|---|---|---|---|---|---|---|
| ASHG19A3A021323 | 8.940928 | Up | ENST00000478252 | RP13-503K1.1 | Ensembl | 3 | Intronic antisense | NSUN3 | Putative methyltransferase NSUN3 |
| ASHG19A3A022918 | 8.39297 | Up | AL359062 | misc_RNA | 3 | Intergenic | |||
| ASHG19A3A042290 | 8.289279 | Up | ENST00000433897 | RP11-397A15.4 | Ensembl | 1 | Intergenic | ||
| ASHG19A3A045578 | 7.7143497 | Up | AK002107 | misc_RNA | 1 | Exon sense-overlapping | RAB3B | Ras-related protein Rab-3B | |
| ASHG19A3A040116 | 7.2975035 | Up | ENST00000447818 | RP11-325E14.3 | Ensembl | X | Intergenic | ||
| ASHG19A3A034842 | 7.117814 | Up | ENST00000419422 | RP11-132A1.4 | Ensembl | 7 | Intergenic | ||
| ASHG19A3A030085 | 6.985488 | Up | ENST00000399980 | RP11-325M4.1 | Ensembl | 6 | Intergenic | ||
| ASHG19A3A049457 | 6.731179 | Up | AK021444 | NRED | 13 | Exon sense-overlapping | POSTN | Periostin isoform 4 | |
| ASHG19A3A049457 | 6.731179 | Up | AK021444 | NRED | 13 | Exon sense-overlapping | POSTN | Periostin isoform 3 | |
| ASHG19A3A049457 | 6.731179 | Up | AK021444 | NRED | 13 | Exon sense-overlapping | POSTN | Periostin isoform 2 | |
| ASHG19A3A007356 | 80.72981 | Down | NR_024602 | CLCA4 | RefSeq_NR | 1 | Exon sense-overlapping | CLCA4 | Calcium-activated chloride channel regulator 4 |
| ASHG19A3A049241 | 42.46477 | Down | ENST00000453176 | RP11-38M15.6 | Ensembl | 13 | Intergenic | ||
| ASHG19A3A018626 | 42.141758 | Down | NR_026755 | C21orf15 | RefSeq_NR | 21 | Intergenic | ||
| ASHG19A3A030827 | 38.225327 | Down | uc003qvy.1 | AL832737 | UCSC_knowngene | 6 | Intergenic | ||
| ASHG19A3A010514 | 29.642584 | Down | NR_026756 | LOC284233 | RefSeq_NR | 18 | Intergenic | ||
| ASHG19A3A018630 | 23.840233 | Down | ENST00000451663 | C21orf81 | Ensembl | 21 | Intergenic | ||
| ASHG19A3A007578 | 23.742765 | Down | NR_027763 | GYS1 | RefSeq_NR | 19 | Bidirectional | RUVBL2 | ruvB-like 2 |
| ASHG19A3A007578 | 23.742765 | Down | NR_027763 | GYS1 | RefSeq_NR | 19 | Exon sense-overlapping | GYS1 | “Glycogen [starch] synthase, muscle isoform 2” |
| ASHG19A3A007578 | 23.742765 | Down | NR_027763 | GYS1 | RefSeq_NR | 19 | Exon sense-overlapping | GYS1 | “Glycogen [starch] synthase, muscle isoform 1” |
| ASHG19A3A051379 | 23.452465 | Down | BC008699 | misc_RNA | 14 | Intergenic |