Table 6.

Differentially expressed enhancer-like lncRNAs and their nearby coding gene pairs that were differentially expressed in carcinomas compared to adjacent nontumor tissues (distance <300 kb)

lncRNAs				mRNAs				Direction (LncRNA-mRNA)
Seqname	Gene symbol	P Value	Fold Change	Nearby gene	Nearby gene symbol	P Value	Fold change
NR_015410	FLJ22536	0.0132885	3.6317198	NM_003107	SOX4	0.010653352	2.9999847	Up-up
Uc002wkq.2	BC069037	0.0349635	2.4205506	NM_175841	SMOX	0.015637238	2.8002222	Up-up
Uc002wkq.2	BC069037	0.0349635	2.4205506	NM_001134338	RNF24	0.016596192	2.018034	Up-up
Uc002wkq.2	BC069037	0.0349635	2.4205506	NM_175839	SMOX	0.026806494	3.3381217	Up-up
Uc002wkq.2	BC069037	0.0349635	2.4205506	NM_175840	SMOX	0.021685325	2.0501275	Up-up
ENST00000417473	AC099344.4	0.0040785	2.2474518	NM_004850	ROCK2	0.04852472	2.2684875	Up-up
ENST00000419064	RP11-13P5.2	0.0049485	3.0325863	NM_032532	FNDC1	0.016545452	3.0720844	Up-up
Uc003nsj.1	AK094433	0.0389439	4.254517	NM_001010909	MUC21	8.35326E-05	798.7413	Down-down
Uc003nsj.1	AK094433	0.0389439	4.254517	NM_001954	DDR1	0.000148092	4.3601513	Down-down
ENST00000433357	RP11-255A11.21	0.004358	6.7445364	NM_002771	PRSS3	0.02605703	3.0595872	Down-down
ENST00000416894	RP11-54A4.8	0.0294946	14.243775	NM_025008	ADAMTSL4	0.045489967	3.7833204	Down-down
ENST00000416894	RP11-54A4.8	0.0294946	14.243775	NM_004425	ECM1	0.000824244	11.762663	Down-down
ENST00000416894	RP11-54A4.8	0.0294946	14.243775	NM_022664	ECM1	0.003080209	23.130184	Down-down
ENST00000416894	RP11-54A4.8	0.0294946	14.243775	NM_019032	ADAMTSL4	0.012949571	7.710182	Down-down
HIT000395572	RP11-54A4.8	0.0307008	2.790272	NM_203459	CAMSAP1L1	0.007201749	2.2794487	Down-up