Table 2.
Histone marks in the SNP LD blocks for CD4+ T cells
| LD region | GWAS index SNP | H3K4me1+/H3K27ac− | H3K4me1−/H3K27ac+ | H3K4me1+/H3K27ac+ | Enhancer signal |
|---|---|---|---|---|---|
| chr1: 114303808–114377568 | rs6679677 | 10 | 2 | 5 | Y |
| chr1:154291718–154379369 | rs11265608,rs72698115* | 16 | 0 | 8 | Y |
| chr10:6078553–6097283 | rs7909519 | 5 | 0 | 3 | Y |
| chr10:90759613–90764891 | rs7069750 | 1 | 1 | 1 | Y |
| chr12:111884608–111932800 | rs7137828* | 6 | 1 | 0 | Y |
| chr14:69250891–69260588 | rs12434551, rs3825568* | 0 | 1 | 2 | Y |
| chr18:12774326–12809340 | rs2847293 | 0 | 1 | 0 | Y |
| chr2:191943742–191973034 | rs10174238 | 4 | 1 | 0 | Y |
| chr21:36712588–36715761 | rs9979383, rs8129030* | 1 | 0 | 0 | Y |
| chr22:21916166–21983260 | rs2266959 | 12 | 0 | 3 | Y |
| chr22:37531436–37537058 | rs2284033 | 4 | 1 | 0 | Y |
| chr4:123309902–123540758 | rs1479924 | 9 | 4 | 4 | Y |
| chr5:55440730–55442249 | rs71624119 | 2 | 0 | 0 | Y |
| chr5:96220087–96373750 | rs27290, rs27293* | 25 | 13 | 12 | Y |
| chr5:131813219–131832514 | rs4705862 | 2 | 1 | 2 | Y |
| chr6:32592737–32797466 | rs7775055** | 0 | 0 | 0 | N |
Note:
*
SNP LD blocks from 1000 genome pilot 1;
**
SNP LD block from HapMap3