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. Author manuscript; available in PMC: 2016 Jul 1.
Published in final edited form as: Phys Biol. 2015 Jun 18;12(4):045005. doi: 10.1088/1478-3975/12/4/045005
CaMc,a,i (∀a ∈ {1, 2}) (∀i ∈ ℐ),
CaMn,a,i (∀a ∈ {1, 2}) (∀i ∈ ℐ),
CaMc,1,iCaMc,2,i (∀i ∈ ℐ),
CaMn,1,iCaMn,2,i (∀i ∈ ℐ),
boundi,jCaMc,1,iCaMc,2,i (∀i ∈ ℐ) (∀j ∈ 𝒥),
boundi,jCaMn,1,iCaMn,2,i (∀i ∈ ℐ) (∀j ∈ 𝒥),
Kkpjboundi,j (∀i ∈ ℐ) (∀j ∈ 𝒥),
KkpjKkpj′dimerjj′ (∀j < j′|j, j′ ∈ 𝒥).