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. 2015 Apr 22;43(Web Server issue):W599–W604. doi: 10.1093/nar/gkv382

Table 2. Summary of the supported values as filters for the queries.

Available filters Description Ontology or control vocabulary (CV) Examples
speciesFilter Species name or taxonomy identifier NCBI taxon ID 9606 /pride/ws/archive/project/list?speciesFilter = 9606
ptmsFilter Protein modification name Unimod or PSI-MOD phosphorylation /pride/ws/archive/project/list?ptmsFilter = phosphorylation
tissueFilter Tissue name BRENDA or Experimental Factor Ontology (EFO) brain/pride/ws/archive/project/list?tissueFilter = brain
diseaseFilter Disease name Human Disease Ontology (DOID) or EFO cancer/pride/ws/archive/project/list?diseaseFilter = cancer
titleFilter Words included in the title of the project Free text stress/pride/ws/archive/project/list?titleFilter = stress
instrumentFilter MS instrument name PRIDE or PSI-MS ltq/pride/ws/archive/project/list?instrumentFilter = ltq
experimentTypeFilter Experiment type name PRIDE or PSI-MS shotgun/pride/ws/archive/project/list?experimentTypeFilter = shotgun
quantificationFilter Quantification method name PRIDE or PSI-MS lable-free /pride/ws/archive/project/list?quantificationFilter = label-free
projectTagFilter Keywords added by PRIDE curators to describe the project Examples of tags: ‘Biological’, ‘Biomedical’, ‘Technical’, ‘Cardiovascular’, ‘Highlighted’. For more details visit http://www.ebi.ac.uk/pride/help/archive/tags Biomedical /pride/ws/archive/project/list?projectTagFilter = Biomedical