Figure 2.

The results screen of the RNAPattMatch web server, matches are found in a table with options to sort and filter by selected parameters. Each row provides a match result by specifying its start index in the target, the corresponding sequence from the target and its aligned structure including the gaps used for the specific match, the amount of gaps used for the match, the matrix cost, the energy of the given match and an option to view the predicted secondary structure drawing while comparing it with the secondary structure drawing of the match itself. There is an option to create an additional query on the same file. If the caching of the data structure is completed it will be used.