Table 2. Databases used to integrate information for annotation and filtering.
| Database/Tool | Description |
|---|---|
| GeneMania (16) | Database of functional association networks |
| PhosphoSitePlus (8) | Database of phospho-sites, including kinase-substrate information and role of phosphorylation on function |
| PhosphoELM (23) | Database of phospho-sites and kinase-substrate relationships |
| KEGG Pathways (18) | Database of curated pathways |
| Animal TFDB (24) | Database of animal transcription factors and binding sites |
| nTFdb (25) | Database of worm transcription factors |
| YEASTRACT (26) | Database of yeast transcription factors and binding sites |
| ELM (6) | Database of Eukaryotic Linear Motifs |
| NetworKIN (9,10) | Tool to predict kinase/substrate relationships |
| STRING (15) | Database of protein associations and interactions |
| ProteoConnections (27) | Data integration tool for proteomics data (SELPHI uses the motifs list) |