Table 2. Databases used to integrate information for annotation and filtering.
Database/Tool | Description |
---|---|
GeneMania (16) | Database of functional association networks |
PhosphoSitePlus (8) | Database of phospho-sites, including kinase-substrate information and role of phosphorylation on function |
PhosphoELM (23) | Database of phospho-sites and kinase-substrate relationships |
KEGG Pathways (18) | Database of curated pathways |
Animal TFDB (24) | Database of animal transcription factors and binding sites |
nTFdb (25) | Database of worm transcription factors |
YEASTRACT (26) | Database of yeast transcription factors and binding sites |
ELM (6) | Database of Eukaryotic Linear Motifs |
NetworKIN (9,10) | Tool to predict kinase/substrate relationships |
STRING (15) | Database of protein associations and interactions |
ProteoConnections (27) | Data integration tool for proteomics data (SELPHI uses the motifs list) |