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. 2015 Apr 16;43(Web Server issue):W395–W400. doi: 10.1093/nar/gkv343

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© The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 1. — Example of using the ENCoM web-server to analyze the unbound form of adenylate kinase (PDB ID .4AKE, Panel A). (B) The Protein structure is represented as an elastic network model, where amino acids are represented by masses (green spheres) and interactions by springs (yellow stick). (C) The mutation K13Q causes an increase in flexibility in the regions marked in red. (D) The eigenvectors representing the two slowest non-trivial modes (shown in red and blue in panel B) were used to generate 49 conformations.