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. 2015 May 5;43(Web Server issue):W91–W97. doi: 10.1093/nar/gkv453

Table 1. Summary of the 21 component networks for FlyNet.

Code Description # Genes # Links
DM-CC Co-citation of two fly genes across Medline and PubMed Central 6027 503 475
DM-CX Co-expression of two fly genes in high-dimensional gene expression data from the GEO database (16) 11 718 275 033
DM-DC Co-occurrence of protein domains between two fly genes (17) 4407 7604
DM-GN Chromosomal proximity between bacterial orthologs of two fly genes in bacterial genomes (18) 1979 15 820
DM-HT Protein–protein interactions (PPIs) identified by high-throughput assays in iRefWeb database (19) 7759 25 519
DM-LC Protein–protein interactions (PPIs) identified by small-scale experiments collected via literature curation in iRefWeb database (19) 1202 2226
DM-PG Phylogenetic profile similarity between two fly genes 3357 80 506
AT-CC Orthology transfer of co-citation links in an A. thaliana network (21) 1747 17 501
AT-CX Orthology transfer of co-expression links in an A. thaliana network (21) 1105 9455
AT-HT Orthology transfer of high-throughput PPI in an A. thaliana network (21) 1013 2823
AT-LC Orthology transfer of literature curated PPI in an A. thaliana network (21) 856 1977
CE-CX Orthology transfer of co-expression links in a C. elegans network (20) 1434 17 497
DR-CX Orthology transfer of co-expression links in a D. rerio network 3223 55 515
HS-CX Orthology transfer of co-expression links in a H. sapiens network 3366 32 482
HS-HT Orthology transfer of high-throughput PPI in a H. sapiens network 2741 12 520
HS-LC Orthology transfer of literature curated PPI in a H. sapiens network 5254 50 488
SC-CC Orthology transfer of co-citation links in a S. cerevisiae network (17) 2449 48 473
SC-CX Orthology transfer of co-expression links in a S. cerevisiae network (17) 1674 18 488
SC-GT Orthology transfer of genetic interactions in a S. cerevisiae network (17) 1254 6482
SC-HT Orthology transfer of high-throughput PPI in a S. cerevisiae network (17) 1622 18 300
SC-LC Orthology transfer of literature-curated PPI in a S. cerevisiae network (17) 2016 16 481
FlyNet Integrated network 13 119 779 484