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. 2015 Jul 2;11(7):e1004354. doi: 10.1371/journal.pcbi.1004354

Fig 2. Structural validation of the model by MD simulations: Nucleic acids flexibility.

Fig 2

(a) The scheme represents the nucleic acid scaffold used in our simulation (numbers denote nucleotide positions). (b)-(d) The RMSF, per nucleotide position, observed in our MD simulations for: mRNA, template DNA and non-template DNA. Grey background denotes those nucleotides that have been observed in crystallographic structures.