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. Author manuscript; available in PMC: 2016 Apr 27.
Published in final edited form as: J Chem Inf Model. 2015 Apr 16;55(4):727–735. doi: 10.1021/acs.jcim.5b00057

Table 1.

Errors as a function of bond length (strain) for naphthalene-benzene.

ID Special bond length (Å) Force
constant(kJmol−1nm−2)
Bond length in simula-
tion(Å)
Errors(kcal/mol)
original none none 1.4057(8) 0.03 ± 0.04
0 1.387 4.0033 1.3979(6) 0.19 ± 0.06
1 1.370 4.0033 1.3893(7) 0.28 ± 0.06
2 1.350 4.0033 1.3795(7) 0.39 ± 0.05
3 1.330 4.0033 1.3698(7) 0.51 ± 0.05
4 1.310 4.0033 1.3604(6) 0.64 ± 0.05
5 1.290 4.0033 1.3514(8) 0.76 ± 0.05
6 1.230 4.0033 1.3237(6) 1.25 ± 0.05
7 1.110 4.0033 1.2659(6) 2.32 ± 0.05
8 0.870 4.0033 1.1524(5) 4.72 ± 0.05
11 1.387 3.6030 1.3977(6) 0.14 ± 0.05
12 1.387 2.4020 1.4001(8) 0.16 ± 0.05
13 1.387 2.0017 1.4006(6) 0.11 ± 0.05
14 1.387 1.6013 1.4014(6) 0.07 ± 0.05
15 1.387 0.4033 1.4065(7) 0.04 ± 0.04
21 1.230 3.6030 1.3283(6) 1.24 ± 0.05
22 1.230 2.4020 1.3438(6) 0.95 ± 0.05
23 1.230 2.0017 1.3500(6) 0.78 ± 0.05
24 1.230 1.6013 1.3591(6) 0.73 ± 0.04
25 1.230 0.4033 1.3925(8) 0.30 ± 0.04