Table 1.
Description of independent test sets analyzed by the new model (PredSTP)
| Independent test sample | Query parameters (PDBa) | Number of proteins | Number of chains |
|---|---|---|---|
| Small protein 92 | ○ SCOP: Small Proteins | 92 | 163 |
| ○ Experimental Method: X-RAY | |||
| ○ Resolution: 1.499 or less | |||
| Only Eukaryote | ○ TAXONOMY: Eukaryota | 45751 | 102748 |
| Only Bacteria | ○ TAXONOMY: Bacteria (eubacteria) | 31664 | 80664 |
| Only Archaea | ○ TAXONOMY: Archaea | 3127 | 8366 |
| Only Virus | ○ TAXONOMY: Viruses | 4629 | 18642 |
| Unassigned | ○ TAXONOMY: Unassigned | 479 | 980 |
| Recently deposited proteins solved by NMR in PDB (July 2012 to March 25 2014) | ○ Experimental Method: solution NMR | 657 | 751 |
aPDB date August, 2013 unless otherwise noted. Protein chain types only