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. 2015 Jul 6;6:342. doi: 10.3389/fimmu.2015.00342

Table 1.

Analysis of the best model for each data set of protein alignment based on PROTTEST and running each receptor in MrBayes for 1 million generations under a mixed model.

Receptors used for analysis Model predicted from PROTTEST/MrBayes Support (Log likelihood)
SRCR-containing proteins (MARCO, SR-A, SCARA5) LG + G/WAG + IG −6950.09
All 5 cA-SRs (MARCO, SCARA3, SCARA4, SCARA5, SR-A) JTT + G −82497.07

WAG, Whelan and Goldman model with invariable (I) sites and gamma (G) distributed rates; LG + G, Le and Gascuel model with gamma distributed rates; JTT + G, Jones Thorton and Taylor model with gamma distributed rates.