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. 2015 Jul 7;10:22. doi: 10.1186/s13015-015-0051-7

Table 2.

Two evaluation algebras for the Sankoff problem

SIGNATURE PROB SIM
nil = 0 0
NoStr (xy) = x + y x + y
Split (xy) = x + y x + y
Pair (a,b,x,c,d) = x + Ψ(a,c) + Ψ(b,d) x + σ(a,b) + σ(c,d) (*)
Ins (ϵ,b) = 0 γ(b)
Del (a,ϵ) = 0 γ(a)
Match (a,b) = 0 σ(a,b)
φ = Max Mx