Table 2.
The 20 most expressed genes in S.elaeagnifolium leaves and flowers
| S.elaeagnifolium transcript | Length (nt) | Annotation (species) | FPKM |
|---|---|---|---|
| cl588 | 962 | Rubisco small subunit (SOLTU) | 7,060.3 |
| cl3504 | 1,874 | Rubisco activase (chloroplast) (CAPAN) | 6,226.3 |
| unigene21118 | 774 | PR4 leaf-precursor (SOLLC) | 5,695.6 |
| unigene17928 | 861 | Non-specific lipid-transfer protein 2-like (SOLLC) | 4,544.6 |
| cl644 | 1,089 | Chlorophyll a-b binding protein 3C chloroplastic-like (SOLTU) | 3,960.1 |
| cl6611 | 921 | Photosystem II 10 kDa polypeptide chloroplastic (SOLTU) | 3,372.1 |
| unigene12950 | 946 | Non-specific lipid-transfer protein 1-like (SOLTU) | 3,007.7 |
| cl8797 | 1,470 | Plastidic aldolase (SOLTU) | 2,583.8 |
| unigene17653 | 1,550 | Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic-like (SOLTU) | 2,355.9 |
| unigene680 | 711 | Cell wall protein precursor (SOLLC) | 2,343.6 |
| cl9787_2 | 602 | HT-protein (SOLPE) | 2,243.7 |
| unigene11345 | 861 | Ferredoxin-1, chloroplastic-like (SOLTU) | 1,916.8 |
| unigene22300 | 602 | Metallothionein-like protein (CAPCH) | 1,870.0 |
| cl7445 | 1,732 | Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 (SOLLC) | 1,573.3 |
| cl9785 | 858 | PR1 precursor/PR1a (SOLLC) | 1,493.1 |
| cl10244 | 1,884 | SAMDC (SOLTU) | 1,433.5 |
| unigene18624 | 790 | Photosystem I reaction center V (chloroplast) (SOLTU) | 1,374.2 |
| unigene7695 | 730 | Photosystem II reaction center W protein, chloroplastic-like (SOLTU) | 1,359.1 |
| unigene22352 | 1,690 | Phosphoribulokinase, chloroplastic-like (SOLTU) | 1,332.0 |
| unigene12941 | 480 | Metallothionein (SOLNI) | 1,311.0 |
The annotation (third column) is based on the annotation of the top hit produced by Blastx searches at the NCBI protein database. All top hits are Solanaceae proteins (species abbreviations by Uniprot). FPKM (fragments per kilobase of exon per million fragments mapped) values produced by RSEM software (fourth column)