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. 2015 May 7;26(3):82–92. doi: 10.1089/hgtb.2015.013

Table 1.

Real-Time Quantitative PCR Primer and Probe Sequences

Target ID Sequence (5′→3′)a Tm (°C) Amplicon (bp)
CMV promoter CMV-F TTC CTA CTT GGC AGT ACA TCT ACG 70 129
  CMV-R GTC AAT GGG GTG GAG ACT TGG 66  
  CMV-P TGA GTC AAA CCG CTA TCC ACG CCC A 78  
AAV2 ITRb ITR-F GGA ACC CCT AGT GAT GGA GTT 64 62
  ITR-R CGG CCT CAG TGA GCG A 54  
  ITR-P CAC TCC CTC TCT GCG CGC TCG 72  
Humanized Renilla green fluorescent proteinc hrGFP-F GAT CCG CAG CGA CAT CAA CC 64 136
  hrGFP-R GTA CAC CAC CTC GAA GCT GG 64  
  hrGFP-P GAG GAG ATG TTC GTG TAC CGC GTG G 80  
SV40 polyadenylation signal SV40-F AGC AAT AGC ATC ACA AAT TTC ACA A 70 96
  SV40-R CCA GAC ATG ATA AGA TAC ATT GA 62  
  SV40-P AGC ATT TTT TTC ACT GCA TTC TAG TTG TGG TTT GTC 98  

AAV2, adeno-associated virus serotype 2; CMV, cytomegalovirus; F, forward; ITR, inverted terminal repeat; P, probe; R, reverse; SV40, simian virus 40; Tm, annealing temperature.

a

Hydrolysis probes were dual-labeled with 6-FAM at the 5′ end and TAMRA at the 3′ end.

b

From Aurnhammer and colleagues.16

c

Designed to EF186083.1.