Table 1. qPCR—used primer sequences.
name | function | sequence 5‘ → 3‘ primer left | sequence 5‘ → 3‘ primer right | efficiency [%] | temperature [°C] |
---|---|---|---|---|---|
GAPDH | glycerinaldehyde-3-phos-dehydrogenase | acccagaagactgtgga | ttgagctcagggatgacctt | 101.8 | 59.5 |
actin | cytoskeleton | gatgagattggcatggcttt | caccttcaccgttccagttt | 99.3 | 58.3 |
VIL-1 | Villin-1 | caccatgaccaaactgaacg | tcgaagaagctgccataggt | 98.4 | 54 |
MUC4 | mucin-4 | gctgacaggaagaggccata | ccccttcaactctggtgtgt | 100 | 54 |
TLR4 | Toll-like-rezeptor 4 | ctggagacgactcaagaagc | agtgaaggctgttgtatcatgc | 97.4 | 60.6 |
OCLN | occludin (TJ) | tgacactctaggcaatcaggtc | gggcccaatttccttatctg | 98.5 | 54 |
VIL-2 | villin-2 (ezrin) | cagtcgacgaaatcctgtga | ggtgcaggtccaacaaggta | 97.5 | 57.1 |
Espin | espin | agaagcggaaagaggaggag | acttagcgatgtcccccttc | 97.2 | 61.6 |
HIF1a | hypoxia inducible factor | tgccagaacctcctgtaacc | atgtacgtggggaggagatg | 94.8 | 54 |
p53 | p53 | cgaactggcatgaaaat | agaagggacaaaggacgaca | 105.8 | 56.2 |
CLDN1 | claudin-1 | ccagtgaagagagcctgacc | tgatgaggtgcagaagatgc | 98.5 | 60.6 |
CLDN3 | claudin-3 | gtccatgggcctggagat | gatctgcgctgtgataatgc | 99.5 | 58.7 |
CLDN7 | claudin-7 | ctcactcccaggacaagagc | tttgtgcgttgatagcttgc | 99.3 | 60.6 |
BAD | BCL-2-antagonist | cttgcaaaaagagccgtttc | ttaagggcggaaaaacttca | 98.3 | 57.6 |
BCL-2 | apoptose-regulator | atttagcctcttgcctgtgg | gcagtttgaggctgcttttt | 96.9 | 54 |
BAX | apoptose-regulator | ggtcgcgcttttctactttg | cgatctcgaaggaagtccag | 99.6 | 60.6 |
PDH | pyruvat-dehydrogenase | acccgatcatgcttctcaag | tagcaaactgtgcagcatcc | 96.7 | 54 |
SDH | succinat-dehydrogenase | actggatgggctgtacgagt | gtcgatcatccagcgatagg | 96.7 | 55.7 |
COX5B | Cytochrome c oxidase subunit 5B | ggagagggaggtcatgatgg | ccactatccgcttgttggtg | 100.2 | 61.2 |
18S | Ribosomal RNA | gcaattattccccatgaacg | ggcctcactaaaccatccaa | 103.9 | 56.5 |
RPL10a | Ribosomal protein | tgcctttttggcttcagaat | actttggccaccatgttctc | 98.7 | 54.7 |
Cyc 1 | Cytochrome C | ctaccatgtcccaggtagcc | aaagcaagcccatcatcatc | 96.7 | 54.7 |