Table 1. Definition of cutoffs.
This table shows the different confidence cutoffs used in the analyses for each dataset, the quality score and how each quality score is converted to the unified confidence score used in the TISSUES web resource.
| Dataset | Low cutoff | Medium cutoff | High cutoff | Score | Confidence score (stars)a |
|---|---|---|---|---|---|
| UniGene | 1 | 10 | 20 | No. of ESTs | 6/(1 + 0.229 ⋅ score−7.898) − 1 |
| GNF | 50 | 100 | 250 | Expression units | log10(score) + 0.7 |
| Exon array | 50 | 100 | 250 | Expression units | 2 ⋅ log10(score) − 3.56 |
| RNA-seq atlas | 0.5 | 1 | 5 | RPKMs | log10(score) + 0.523 |
| HPA RNA-seq | 1 | 10 | 20 | FPKMs | log10(score) − 0.176 |
| HPA IHC | 0 | 1.1 | 1.9 | IHC score | score/5.5 |
| HPM | 1 | 5 | 10 | No. of tryptic peptides | score/30 + 0.5 |
| Text mining | 0 | 2.5 | 3.5 | Z-score | max(score/2.4) |
Notes.
These functions were calculated using the ‘Non-linear curve fitting’ functionality that xmgrace provides via its GUI.