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. 2015 Jun 30;3:e1054. doi: 10.7717/peerj.1054

Table 1. Definition of cutoffs.

This table shows the different confidence cutoffs used in the analyses for each dataset, the quality score and how each quality score is converted to the unified confidence score used in the TISSUES web resource.

Dataset Low cutoff Medium cutoff High cutoff Score Confidence score (stars)a
UniGene 1 10 20 No. of ESTs 6/(1 + 0.229 ⋅ score−7.898) − 1
GNF 50 100 250 Expression units log10(score) + 0.7
Exon array 50 100 250 Expression units 2 ⋅ log10(score) − 3.56
RNA-seq atlas 0.5 1 5 RPKMs log10(score) + 0.523
HPA RNA-seq 1 10 20 FPKMs log10(score) − 0.176
HPA IHC 0 1.1 1.9 IHC score score/5.5
HPM 1 5 10 No. of tryptic peptides score/30 + 0.5
Text mining 0 2.5 3.5 Z-score max(score/2.4)

Notes.

a

These functions were calculated using the ‘Non-linear curve fitting’ functionality that xmgrace provides via its GUI.