Table 2.
Comparison of RNA-seq-derived average transcript levels of putative BdPAL genes in BdPAL RNAi1-1 stem plus leaf sheath tissues versus empty vector control (CTL)
| Locus ID | Gene ID | Gene name | CTL | BdPAL RNAi1-1 | Fold change | P-value | Adjusted P-value |
|---|---|---|---|---|---|---|---|
| LOC100839236 | Bradi3g49250 | BdPAL1 | 20 340 | 8902 | 0.4 | 6.7E-08 | 5.4E-05 |
| LOC100840340 | Bradi3g49260 | BdPAL2 | 11 172 | 6829 | 0.6 | 3.7E-08 | 3.4E-05 |
| LOC100841149 | Bradi3g49270 | BdPAL3 | 10 | 7 | 0.7 | 0.695 | 1 |
| LOC100841454 | Bradi3g49280 | BdPAL4 | 475 | 658 | 1.4 | 0.008 | 0.383 |
| LOC100829928 | Bradi3g48840 | BdPAL5 | 64 | 70 | 1.1 | 0.749 | 1 |
| LOC100843583 | Bradi3g47110 | BdPAL6 | 0 | 1 | NA | 0.997 | 1 |
| LOC100844192 | Bradi3g47120 | BdPAL7 | 0 | 0 | NA | 0.991 | 1 |
| LOC100845653 | Bradi5g15830 | BdPAL8 | 370 | 377 | 1.0 | 0.991 | 1 |
n=3 for RNAi1-1 and CTL samples each.