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. 2015 Jun 19;66(14):4239–4250. doi: 10.1093/jxb/erv283

Fig. 5.

Fig. 5.

Mauve visualization of the region around the scIvana elements in sugarcane BACS and other grass genomes (S. bicolor, Z. mays, and O. sativa). The BAC sequence and each genome are laid out in a horizontal track. Annotated coding regions are shown as white boxes and TEs as pink boxes. A coloured similarity plot (locally collinear blocks) is shown for each genome, the height of which is proportional to the level of sequence identity in that region. The same colour represents regions of highest similarity. (A) BAC SCHRBa_011_K15 (scIvana1.1); (B) SCHRBa_044_D02 (scIvana1.2). Orange boxes, SHCRBa_011_K15.13, Sobic.008G106700, and GRMZM2G326116, translation initiation factors; green boxes, SHCRBa_044_D02.1, Sobic.007G192200, LOC_Os08g42040, and GRMZM2G083725, similar to lipid transfer protein-like; purple boxes, SHCRBa_044_D02.4, Sobic.007G192100, LOC_Os08g42050, and GRMZM2G083551), similar to coated vesicle membrane protein-like; bright pink boxes, SHCRBa_044_D02.7, Sobic.007G192000, LOC_Os08g42080, and GRMZM2G083538, ACT domain repeats.