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. Author manuscript; available in PMC: 2015 Jul 7.
Published in final edited form as: Infect Genet Evol. 2011 Dec 27;12(2):181–190. doi: 10.1016/j.meegid.2011.11.014

Fig. 2.

Fig. 2

Radial phylogram showing relationships between different lineages of WNV. Complete coding sequences were downloaded from Genbank and aligned manually in BioEdit. Strains used and accession numbers are as follows: JEV, NC_001437; NY99, lineage Ia, NC_009942; Kunjin, paKUN, lineage Ib, AY274505.1; Indi804994, Indian lineage Ic, DQ256376.1; 956, lineage II, NC_001563; Rabensburg, lineage III, AY765264.1; RussianLEIV, lineage IV, strain Krnd88-190, AY277251.1; Koutango virus, EU082200.1. Bayesian phylogeny is shown, generated with MrBayes 3.1.2 run with a general time reversible (GTR) model with gamma shaped rate variation and invariable sites (Ronquist and Huelsenbeck, 2003). Two Markov chain Monte Carlo (MCMC) tree searches of 5000,000 generations each were run in parallel with sampling one in every 1000 trees. Radial 50% majority-rule consensus tree is shown based on the last 3750 trees. Posterior probabilities are given as numbers at each node.