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. 2015 Jul 8;8:299. doi: 10.1186/s13104-015-1261-2

Table 2.

Number of RAD locus clusters and interspecific variants identified for each analysis

Species Parameters Analysis pipeline Minimum taxon coverage Number of orthologous RAD loci Number (%) of orthologous RAD loci in genes Number of variants for relationship estimation Range of missing interspecific variants in included species Percentage of missing data in RAxML matrix
Salmonids Strict BLASTN 5 3,050 375 (12.3) 6,959 NA 0
Salmonids Strict BLASTN ≥3 22,632 1,407 (6.2) 39,890 3,135–21,480 25.09
All ten species Relaxed BLASTN 10 1 1 (100.0) NA NA NA
All ten species Relaxed BLASTN ≥7 137 106 (77.4) 1,440 37–745 25.50
All ten species Relaxed BLASTN ≥5 452 321 (71.0) 4,094 371–2,881 36.75