Table 2.
The list of unique AS reference models in hg38 assembly.
| # | Chrom | Name | Size (bp) | SF | State | HOR symbola[3] |
|---|---|---|---|---|---|---|
| 1 | chr1 | GJ211836.1 | 198,076 | 3 | ||
| 2 | chr1 | GJ211837.1 | 278,512 | 3 | ||
| 3 | chr1 | GJ211855.1 | 63,597 | 3 | ||
| 4 | chr1 | GJ211857.1 | 83,495 | 3 | ||
| 5 | chr1, 5, 19b | GJ212202.1 | 2,282,185 | 1 | Live | D1Z7/D5Z2/D19Z3 |
| 6 | chr2 | GJ211860.1 | 1,902,412 | 2 | Live | D2Z1 |
| 7 | chr3 | GJ211866.1 | 461,128 | 1,5 | ||
| 8 | chr3 | GJ211867.1 | 13,936 | 1,5 | ||
| 9 | chr3 | GJ211871.1 | 2,102,155 | 1 | Live | D3Z1 |
| 10 | chr4 | GJ211881.1 | 2,031,890 | 2 | Live | D4Z1 |
| 11 | chr5 | GJ211882.1a | 83,162 | 5 | ||
| 12 | chr5 | GJ211883.1 | 227,563 | 5 | ||
| 13 | chr5 | GJ211884.1 | 264,463 | 5 | ||
| 14 | chr5 | GJ211886.1 | 46,345 | 5 | ||
| 15 | chr5 | GJ211887.1 | 142,630 | 1 | ||
| 16 | chr5, 19b | GJ211904.2 | 53,672 | 5 | ||
| 17 | chr5, 19b | GJ211906.2 | 338,504 | 5 | ||
| 18 | chr6 | GJ211907.1 | 1,276,046 | 1 | Live | D6Z1 |
| 19 | chr7 | GJ211908.1 | 2,658,581 | 1 | Live | D7Z1 |
| 20 | chr7 | GJ212194.1 | 150,232 | 5 | ||
| 21 | chr8 | GJ211909.1 | 1,843,521 | 2 | Live | D8Z2 |
| 22 | chr9 | GJ211929.1 | 2,128,923 | 2 | Live | D9Z4 |
| 23 | chr10 | GJ211930.1 | 249,218 | 1 | ||
| 24 | chr10 | GJ211932.1 | 1,561,440 | 1 | Live | D10Z1 |
| 25 | chr10 | GJ211933.1 | 48,180 | 1 | ||
| 26 | chr10 | GJ211936.1 | 47,701 | 1 | ||
| 27 | chr11 | GJ211938.1 | 11,969 | 5 | ||
| 28 | chr11 | GJ211943.1 | 3,251,982 | 3 | Live | D11Z1 |
| 29 | chr11 | GJ211948.1 | 82,575 | 3 | ||
| 30 | chr12 | GJ211949.1 | 47,204 | 1 | ||
| 31 | chr12 | GJ211954.1 | 2,349,957 | 1 | Live | D12Z3 |
| 32 | chr13, 14, 21, 22b | GJ211955.2 | 22,537 | 4 + | ||
| 33 | chr13, 14, 21, 22b | GJ211961.2 | 88,022 | 4 + | ||
| 34 | chr13, 14, 21, 22b | GJ211962.2 | 54,133 | 4 + | ||
| 35 | chr13, 14, 21, 22b | GJ211963.2c | 63,535 | 4 + | ||
| 36 | chr13, 14, 21, 22b | GJ211965.2 | 20,670 | 5 | ||
| 37 | chr13, 14, 21, 22b | GJ211967.2 | 6670 | 4 + | ||
| 38 | chr13, 14, 21, 22b | GJ211968.2 | 3245 | 4 + | ||
| 39 | chr13, 14, 21, 22b | GJ211969.2 | 22,561 | 4 + | ||
| 40 | chr13, 14, 21, 22b | GJ211972.2 | 1,134,211 | 2 | Live | D14Z9/D22Z? |
| 41 | chr13, 14, 21, 22b | GJ211986.2 | 1198 | 4 + | ||
| 42 | chr13, 14, 21, 22b | GJ211991.2 | 632,586 | 2 | Live | D13Z1/D21Z1 |
| 43 | chr13, 14, 21, 22b | GJ212205.1 | 340 | 1 | ||
| 44 | chr13, 14, 21, 22b | GJ212206.1 | 340 | 1 | ||
| 45 | chr15 | GJ212036.1 | 415,278 | 4 + | ||
| 46 | chr15 | GJ212042.1 | 855,957 | 4 + | ||
| 47 | chr15 | GJ212045.1 | 1,370,146 | 2 | Live | D15Z3 |
| 48 | chr16 | GJ212046.1 | 23,302 | 2 | ||
| 49 | chr16 | GJ212051.1 | 1,928,003 | 1 | Live | D16Z2 |
| 50 | chr17 | GJ212053.1 | 381,239 | 3 | ||
| 51 | chr17 | GJ212054.1c | 3,371,615 | 3 | Live | D17Z1 |
| 52 | chr17 | GJ212055.1 | 49,431 | 3 | ||
| 53 | chr18 | GJ212060.1 | 319,478 | 2 | ||
| 54 | chr18 | GJ212062.1 | 4,763,584 | 2 | Live | D18Z1 |
| 55 | chr18 | GJ212066.1 | 93,042 | 2 | ||
| 56 | chr18 | GJ212067.1 | 39,636 | 2 | ||
| 57 | chr18 | GJ212069.1 | 76,958 | 2 | ||
| 58 | chr18 | GJ212071.1c | 21,409 | 2 | ||
| 59 | chr20 | GJ212091.1 | 150,723 | 2 | ||
| 60 | chr20 | GJ212093.1 | 1,886,394 | 2 | Live | D20Z2 |
| 61 | chr20 | GJ212095.1 | 47,956 | 2,5 | ||
| 62 | chr20 | GJ212105.1 | 80,766 | 4 + | ||
| 63 | chr20 | GJ212107.1c | 78,875 | 4 + | ||
| 64 | chr20 | GJ212117.1 | 120,944 | 5 | ||
| 65 | chrX | GJ212192.1 | 3,806,963 | 3 | Live | DXZ1 |
| 66 | chrY | GJ212193.1 | 227,095 | 4 + | Live | DYZ3 |
a
Identity of reference models marked as “live” with the known live HORs of respective chromosomes was verified by BLASTing the sequences in our HOR list in [3] to the first 10,000 bp of respective reference model. In all cases multiple hits of 93% or higher were obtained.
b
Only one representative member of a group of identical reference models is listed. For complete list, see Supplementary Table S1.
c
Corrected versions of these reference models were obtained from K. Miga and used for analysis.