Table 4.
SF1/SF5 and SF2/SF5 mixed AS regions in hg38 assembly.
| SF | Location | Position in hg38 | Contig | Sizea (bp) | SF1% | SF2% | SF5% | HORs on dot-matrix |
|---|---|---|---|---|---|---|---|---|
| SF2/SF5 | 2q21.2 | chr2:132,237,392–132,247,263 | AC097532.3 | 9871 | 0 | 22 | 58 | No HOR |
| SF1/SF5 | 3p11.1 | chr3:90,482,385–90,722,299 | ABBA01004652.1, AEKP01209350.1, ABBA01004653.1, AEKP01209353.1, ABBA01004654.1, ABBA01004655.1, ABBA01004656.1 | 229,441 | 40 | 0 | 41 | No HOR |
| SF1/SF5 | 3p11.1 3q11.1 | chr3:90,772,554–91,233,510 | GJ211866.1 | 460,956 | 48 | 0 | 35 | HOR 1.7 kb |
| SF1/SF5 | 3q11.1 | chr3:91,233,782–91,247,547 | GJ211867.1 | 13,765 | 57 | 0 | 31 | No HOR other than AB dimer, identity ~ 93% |
| SF1/SF5 | 3q11.1 | chr3:91,247,775–91,286,183 | ABBA01000927.1, ABBA01000928.1, ABBA01000929.1, ABBA01000930.1, ABBA01000931.1 | 17,430 | 50 | 0 | 32 | HOR 1.7 kbb |
| SF1/SF5 | 3q11.1 | chr3:93,716,246–93,725,946 | ABBA01026974.1 | 9700 | 35 | 0 | 49 | No HOR |
| SF1/SF5 | 6q11.1 | chr6:60,230,028–60,241,613 | AC244258.2 | 11,401 | 28 | 0 | 53 | No HOR |
| SF1/SF5 | 6q11.1 | chr6:61,371,445–61,427,364 | AEKP01189806.1, AEKP01189805.1, AEKP01189804.1, AEKP01189803.1, AEKP01189802.1, FP325349.3 | 55,519 | 30 | 0 | 57 | No HOR |
| SF2/SF5 | 7q11.1 | chr7:61,096,433–61,103,082 | AC142121.2, AC017075.8 | 6649 | 0 | 38 | 46 | No HOR |
| SF1/SF5 | 8p11.1 | chr8:43,940,231–43,965,733 | AC127507.4, AC144576.3 | 22,886 | 15 | 0 | 74 | No HOR |
| SF1/SF5 | 8q11.1 | chr8:45,946,092–45,971,262 | AC118650.5 | 22,549 | 16 | 0 | 70 | No HOR |
| SF2/SF5 | 9p11.2 | chr9:40,556,928–40,565,104 | AMYH02020868.1, FP325318.4 | 7524 | 0 | 40 | 46 | No HOR |
| SF2/SF5 | 9p11.2 | chr9:40,862,745–40,873,147 | AL353626.5 | 10,402 | 0 | 28 | 50 | No HOR |
| SF1/SF5 | 10p11.1 | chr10:39,548,571–39,555,979 | ABBA01020707.1 | 7408 | 35 | 0 | 52 | No HOR |
| SF1/SF5 | 12p11.1 | chr12:34,686,342–34,715,037 | AC144535.4, AUXG01000432.1 | 28,658 | 60 | 0 | 30 | No HOR |
| SF2/SF5 | 16p11.2 | chr16:34,219,066–34,252,724 | AC136932.4, ABBA01017803.1 | 30,263 | 0 | 35 | 36 | No HOR |
| SF2/SF5 | 20q11.1 | chr20:28,509,094–28,556,877 | GJ212095.1 | 47,783 | 0 | 27 | 54 | HOR 1.9 kb |
| SF2/SF5 | 22q11.1 | chr22:15,965,313–15,972,300 | AC145543.3 | 6987 | 0 | 41 | 34 | No HOR |
a
Size has been corrected to exclude L1-repeats and gaps.
b
Same HOR as in GJ211866.