Table 2.
Numbers of DE genes for the different comparisons
| Comparison | # of DE genes (FDR = 0.10) | |
|---|---|---|
| WG effect | HvHg-HvLg contrast on 4dpi | 0 |
| HvHg-HvLg contrast on 7dpi | 0 | |
| LvHg-LvLg contrast on 4dpi | 2 | |
| LvHg-LvLg contrast on 7dpi | 709 | |
| VL effect | HvHg-LvHg contrast on 4dpi | 0 |
| HvHg-LvHg contrast on 7dpi | 0 | |
| HvLg-LvLg contrast on 4dpi | 2 | |
| HvLg-LvLg contrast on 7dpi | 0 | |
| WG and VL interaction effect | (HvHg-HvLg)-(LvHg-LvLg) contrast on 4dpi | 1 |
| (HvHg-HvLg)-(LvHg-LvLg) contrast on 7dpi | 0 | |
| day effect | 4dpi-0dpi contrast | 239 |
| 7dpi-0dpi contrast | 165 | |
| genotype effect | genotype (AB vs AA) contrast on 4dpi | 0 |
| genotype (AB vs AA) contrast on 7dpi | 0 |
Comparisons were made for a WG, VL, day and genotype effect. The FDR was set at 0.10