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. 2015 Apr 15;5(5):1854–1861.

Table 2.

Basic information of candidate SNPs

SNP ID Gene Name Allele (A/B) Chromosome position MAF HWE p ORs 95% CI p

Case Control
rs11249433 LOC647121 C/T chr1: 121280613 0.019 0.033 0.892 0.57 0.23 1.46 0.238
rs2981579 FGFR2 C/T chr10: 123337335 0.431 0.480 0.706 0.82 0.62 1.10 0.180
rs1219648 FGFR2 G/A chr10: 123346190 0.494 0.452 0.998 1.19 0.89 1.58 0.139
rs10510102 ATE1 G/A chr10: 123625190 0.157 0.206 0.766 0.72 0.49 1.04 0.081
rs2380205 T/C chr10: 5886734 0.144 0.086 0.915 1.79 1.13 2.83 0.012*
rs10822013 ZNF365 T/C chr10: 64251977 0.489 0.447 0.888 1.19 0.89 1.58 0.245
rs10995190 ZNF365 A/G chr10: 64278682 0.022 0.005 0.997 4.40 0.93 20.88 0.086
rs704010 ZMIZ1 A/G chr10: 80841148 0.343 0.302 0.010# 1.21 0.89 1.64 0.223
rs3817198 LSP1 C/T chr11: 1909006 0.119 0.145 0.474 0.80 0.52 1.22 0.294
rs614367 T/C chr11: 69328764 0.019 0.005 0.997 3.86 0.80 18.73 0.071
rs999737 RAD51L1 T/C chr14: 69034682 0.003 0.005 0.997 0.54 0.05 5.98 0.610
rs3803662 TOX3 C/T chr16: 52586341 0.315 0.334 0.795 0.92 0.67 1.24 0.573
rs3112612 LOC643714 C/T chr16: 52635164 0.255 0.216 0.997 1.25 0.89 1.75 0.197
rs4973768 SLC4A7 T/C chr3: 27416013 0.261 0.234 0.882 1.16 0.83 1.61 0.380
#

site with HWE p ≤ 0.01 is excluded;

*

p value ≤ 0.05 indicates statistical significance;

Abbreviations: SNP, single nucleotide polymorphism; MAF, minor allele frequency; HWE, Hardy-Weinberg equilibrium; OR, odd ratio; CI, confidence interval; A/B stands for minor/major alleles on the control sample frequencies.