Table 2.
Basic information of candidate SNPs
SNP ID | Gene Name | Allele (A/B) | Chromosome position | MAF | HWE p | ORs | 95% CI | p | ||
---|---|---|---|---|---|---|---|---|---|---|
| ||||||||||
Case | Control | |||||||||
rs11249433 | LOC647121 | C/T | chr1: 121280613 | 0.019 | 0.033 | 0.892 | 0.57 | 0.23 | 1.46 | 0.238 |
rs2981579 | FGFR2 | C/T | chr10: 123337335 | 0.431 | 0.480 | 0.706 | 0.82 | 0.62 | 1.10 | 0.180 |
rs1219648 | FGFR2 | G/A | chr10: 123346190 | 0.494 | 0.452 | 0.998 | 1.19 | 0.89 | 1.58 | 0.139 |
rs10510102 | ATE1 | G/A | chr10: 123625190 | 0.157 | 0.206 | 0.766 | 0.72 | 0.49 | 1.04 | 0.081 |
rs2380205 | T/C | chr10: 5886734 | 0.144 | 0.086 | 0.915 | 1.79 | 1.13 | 2.83 | 0.012* | |
rs10822013 | ZNF365 | T/C | chr10: 64251977 | 0.489 | 0.447 | 0.888 | 1.19 | 0.89 | 1.58 | 0.245 |
rs10995190 | ZNF365 | A/G | chr10: 64278682 | 0.022 | 0.005 | 0.997 | 4.40 | 0.93 | 20.88 | 0.086 |
rs704010 | ZMIZ1 | A/G | chr10: 80841148 | 0.343 | 0.302 | 0.010# | 1.21 | 0.89 | 1.64 | 0.223 |
rs3817198 | LSP1 | C/T | chr11: 1909006 | 0.119 | 0.145 | 0.474 | 0.80 | 0.52 | 1.22 | 0.294 |
rs614367 | T/C | chr11: 69328764 | 0.019 | 0.005 | 0.997 | 3.86 | 0.80 | 18.73 | 0.071 | |
rs999737 | RAD51L1 | T/C | chr14: 69034682 | 0.003 | 0.005 | 0.997 | 0.54 | 0.05 | 5.98 | 0.610 |
rs3803662 | TOX3 | C/T | chr16: 52586341 | 0.315 | 0.334 | 0.795 | 0.92 | 0.67 | 1.24 | 0.573 |
rs3112612 | LOC643714 | C/T | chr16: 52635164 | 0.255 | 0.216 | 0.997 | 1.25 | 0.89 | 1.75 | 0.197 |
rs4973768 | SLC4A7 | T/C | chr3: 27416013 | 0.261 | 0.234 | 0.882 | 1.16 | 0.83 | 1.61 | 0.380 |
site with HWE p ≤ 0.01 is excluded;
p value ≤ 0.05 indicates statistical significance;
Abbreviations: SNP, single nucleotide polymorphism; MAF, minor allele frequency; HWE, Hardy-Weinberg equilibrium; OR, odd ratio; CI, confidence interval; A/B stands for minor/major alleles on the control sample frequencies.