Table 2. Relative abundance of A. lacustris related reads in metagenomic and SSU amplicon data sets.
| Data set | Type | Size (n) | Recruited reads (n) | Correct for completeness (n) | Relative abundance (%) |
|---|---|---|---|---|---|
| Damariscotta (Spring) | 454 metagenome | 343 495 | 14 | 29 | 0.008 |
| Damariscotta (Summer) | 454 metagenome | 399 994 | 15 | 31 | 0.008 |
| Mendota (Spring) | 454 metagenome | 484 350 | 17 | 35 | 0.007 |
| Mendota (Summer) | 454 metagenome | 562 100 | 11 | 23 | 0.004 |
| Sparkling (Spring) | 454 metagenome | 137 643 | 4 | 8 | 0.006 |
| Sparkling (Summer) | 454 metagenome | 53 174 | 1 | 2 | 0.004 |
| Ekoln | 454 metagenome | 324 764 | 18 | 37 | 0.011 |
| Erken | 454 metagenome | 665 775 | 46 | 95 | 0.014 |
| Vattern | 454 metagenome | 332 583 | 18 | 37 | 0.011 |
| SRR305966a | SSU amplicon (SRA) | 528 037 | 13 | — | 0.002 |
| SRR305967a | SSU amplicon (SRA) | 435 378 | 8 | — | 0.002 |
| ERR204530a | SSU amplicon (SRA) | 1998 | 4 | — | 0.2 |
| ERR204548a | SSU amplicon (SRA) | 1154 | 1 | — | 0.087 |
| ERR204555a | SSU amplicon (SRA) | 866 | 1 | — | 0.115 |
| ERR204613a | SSU amplicon (SRA) | 604 | 1 | — | 0.166 |
| ERR204649a | SSU amplicon (SRA) | 2139 | 1 | — | 0.047 |
| ERR204651a | SSU amplicon (SRA) | 673 | 1 | — | 0.149 |
| ERR204690a | SSU amplicon (SRA) | 3946 | 1 | — | 0.025 |
| ERR204702a | SSU amplicon (SRA) | 919 | 2 | — | 0.218 |
| ERR204743a | SSU amplicon (SRA) | 3074 | 1 | — | 0.033 |
| RARE_MSF_Bv6v4a | SSU amplicon (VAMPS) | 216 537 | 7 | — | 0.003 |
| RARE_NFF_Bv6v4a | SSU amplicon (VAMPS) | 307 126 | 22 | — | 0.007 |
| RARE_WHF_Bv6v4a | SSU amplicon (VAMPS) | 440 607 | 2 | — | 0.0005 |
a
Study titles and environment type can be found in Supplementary Table 5.